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Table 2 Comparison of shared transcriptional regulatory elements for 8 gene expression patterns for U-937 Minus and Plus subclones. The top 5% of the resultant output table of regulatory elements are shown below. The entire table can be viewed enlarged in the Supplemental Material. The second row shows the number of elements in the cluster identified by pattern in the top row with the names of potential transcription factor binding sites in the first column. The entire output table represents a resource for interrogating possible involvement of regulatory pathways controlling expression of genes within and between each cluster.

From: Transcriptomic response to differentiation induction

Cluster UUU- UUD- UDU- UDD- DUU- DUD- DDU- DDD- UUU+ UUD+ UDU+ UDD+ DUU+ DUD+ DUD+ DDD+
Factors 14 26 23 42 9 20 133 58 85 32 16 6 44 20 26 74
A-MuLV_US1   x      x x x x       x
A-MuLV_US1!   x               x
AP-2_CS3!          x        
AP-2_CS4        x          
AP-2_CS4!     x     x      x    
AP-2_CS5        x x   x       
AP-2_CS5!              x x   
AP-2_CS6   x   x    x    x x   x    
AP-2_CS6!   x x x   x x x x    x x   x x