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Table 2 Surface accessibility and secondary structure

From: Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding proteins

surface accessibility*

secondary structure**

 

helix

strand

coil

turn

total

1 – 10%

60,833

48,079

23,319

19,417

151,648

11 – 20%

16,411

9,849

11,260

10,601

48,121

21 – 30%

13,424

7,374

9,147

9,695

39,640

31 – 40%

12,014

6,158

7,857

9,869

35,898

41 – 50%

10,923

4,992

7,131

9,748

32,794

51 – 60%

10,578

4,372

6,484

9,575

31,009

61 – 70%

9,856

3,745

5,825

9,465

28,891

71 – 80%

9,130

3,141

5,149

8,207

25,627

81 – 90%

8,232

2,583

4,250

7,470

22,535

91 – 100%

30,045

6,573

17,945

32,968

87,531

 

181,446

96,866

98,367

127,015

503,694

  1. * The average surface accessibility is reported when multiple PDB chains are aligned at a site.
  2. ** The most commonly called secondary structure type is reported when multiple PDB chains are aligned at a site.