From: ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes
GenBank information | ZCURVE_V | GeneMarkb | Glimmer d | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Organisms | Sequence length (bp) | GC content | No. of annotated genes | No. of predicted genes | S n | S p | No. of predicted genes | S n | S p | No. of predicted genes | S n | S p |
CNPV | 359,853 | 30.37 | 328 | 342 | 99.4 | 95.3 | 327 | 97.9 | 98.2 | 351 | 99.1 | 92.6 |
FPV | 288,539 | 30.89 | 261 | 282 | 95.4 | 88.3 | 257 | 93.5 | 94.9 | 307 | 95.0 | 80.8 |
THV | 195,859 | 66.61 | 158 | 199 | 90.5 | 71.9 | 109 | 57.6 | 83.5 | 207 | 50.6 | 38.6 |
ASFV | 170,101 | 38.95 | 151 | 164 | 96.0 | 88.4 | 148 | 93.4 | 95.3 | 185 | 95.4 | 77.8 |
MYXV | 161,773 | 43.56 | 170 | 170 | 98.8 | 98.8 | 172 | 97.6 | 96.5 | 180 | 98.2 | 92.8 |
SFV | 159,857 | 39.53 | 165 | 170 | 96.4 | 93.5 | 168 | 97.0 | 95.2 | 188 | 98.2 | 86.2 |
YLDV | 144,575 | 27.00 | 152 | 156 | 99.3 | 96.8 | 155 | 98.7 | 96.8 | 165 | 98.7 | 90.9 |
ORFV | 139,962 | 63.44 | 130 | 131 | 92.3 | 91.6 | 133 | 91.5 | 89.5 | 187 | 97.7 | 67.9 |
BPSV | 134,431 | 64.50 | 131 | 144 | 96.9 | 88.2 | 135 | 93.9 | 91.1 | 150 | 86.3 | 75.3 |
AcNPV | 133,894 | 40.70 | 155 | 155 | 97.4 | 97.4 | 152 | 94.8 | 96.7 | 174 | 96.2 | 86.2 |
BmNPV | 128,413 | 40.40 | 143 | 139 | 97.2 | 100 | 139 | 95.1 | 97.8 | 157 | 95.8 | 87.3 |
PhopGV | 119,217 | 35.7 | 130 | 132 | 96.2 | 94.7 | 130 | 93.1 | 93.1 | 168 | 96.9 | 75.0 |
AdhoNPV | 113,220 | 35.64 | 125 | 121 | 92.0 | 95.0 | 125 | 94.4 | 94.4 | 143 | 95.2 | 83.2 |
LCDV-1 | 102,653 | 29.07 | 110 | 112 | 97.3 | 95.5 | 110 | 96.4 | 96.4 | 114 | 98.2 | 94.7 |
PxGV | 100,999 | 40.69 | 120 | 116 | 93.3 | 96.6 | 123 | 92.5 | 90.2 | 131 | 94.2 | 86.3 |
AdorGV | 99,657 | 34.49 | 119 | 121 | 97.5 | 95.9 | 116 | 94.1 | 96.6 | 137 | 95.8 | 83.2 |
NeleNPV | 81,755 | 33.31 | 93 | 101 | 92.5 | 85.1 | 73 | 75.3 | 95.9 | 125 | 91.4 | 68.0 |
FAdV-9 | 45,063 | 53.78 | 29 | 48 | 100 | 60.4 | 35 | 96.6 | 80 | 60 | 100 | 48.3 |
PAdV-5 | 32,621 | 50.50 | 30 | 35 | 90.0 | 77.1 | 27 | 76.7 | 85.2 | 39 | 90.0 | 69.2 |
IBV | 27,608 | 37.93 | 10 | 10 | 90.0 | 90.0 | 7 | 70 | 100 | 10 | 70.0 | 70.0 |
CTV | 19,296 | 45.27 | 11 | 11 | 100 | 100 | 8 | 72.7 | 100 | 12 | 90.9 | 83.3 |
SHFV | 15,717 | 50.11 | 11 | 11 | 100 | 100 | 8 | 54.5 | 75 | -- | -- | -- |
BYV | 15,480 | 46.03 | 8 | 8 | 100 | 100 | 7 | 87.5 | 100 | 11 | 100 | 72.7 |
FDLV | 15,378 | 43.13 | 8 | 8 | 100 | 100 | 8 | 100 | 100 | 11 | 100 | 72.7 |
EAV | 12,704 | 51.66 | 9 | 9 | 88.8 | 88.8 | 6 | 55.5 | 83.3 | 11 | 77.8 | 63.6 |
SFV | 11,442 | 53.22 | 2 | 2 | 100 | 100 | 2 | 100 | 100 | -- | -- | -- |
BCMV | 9612 | 42.22 | 1 | 1 | 100 | 100 | 2 | 100 | 50 | 3 | 100 | 33.3 |
GLV | 8363 | 43.86 | 6 | 6 | 100 | 100 | 4 | 66.7 | 100 | 7 | 50 | 42.9 |
FMV | 7743 | 35.36 | 7 | 7 | 100 | 100 | 7 | 100 | 100 | 7 | 100 | 100 |
SCMV | 4194 | 51.55 | 4 | 3 | 75 | 100 | 2 | 50 | 100 | 2 | 50 | 100 |
Average (upper 15)c | - | - | - | - | 95.9 95.9 | 92.8 | - | 92.5 | 94.0 | - | 93.05 | 81.0 |
Average (lower 15)c | - | - | - | - | 95.6 | 93.2 | - | 80.0 | 91.1 | - | 85.84 | 69.8 |
Average (30)c | - | - | - | - | 95.7 | 93.0 | - | 86.2 | 92.5 | - | 89.70 | 75.8 |