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Table 1 Novel putative motifs found by GONOME. GONOME was used to find over-represented GO terms associated with each possible n-mer (for n from 5 to 11) in the S. Cerevisiae genome, here are some of the significant motifs not reported elsewhere. (Motifs are expressed in IUPAC extended DNA alphabet: K is G or T; V is G, C or A; B is G or T or C; S is G or C; M is A or C)

From: GONOME: measuring correlations between GO terms and genomic positions

Motif

GO Term

GONOME E-value

Transcription Factors

CCCCTAAAA

vitamin metabolism

2.5e-7

ADR1, NRG1

GCCCTAA

rRNA modification

1.1e-5

NRG1

TCCGCGG

Response to drug

8.7e-11

SUT1, STB5

GGVBCCSG

Translation

3.3e-30

-

CACGTGA

Sulfur amino acid metabolism

6.5e-10

CBF1

GKKGSMAAA

Protein catabolism

1.0e-10

 

TGGCAAA

Protein catabolism

7.0e-4

-