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Table 1 The dependence of ROC scores of several variables on the co-localization threshold for the MIPS/DIP interaction data. The variables are: GO process similarity, GO function similarity, and correlations between microarray data under various environmental conditions [19]. For each threshold we computed the average ROC scores for 10 drawings of the negative examples. The standard deviation is shown in parentheses.

From: Choosing negative examples for the prediction of protein-protein interactions

threshold GO process GO function microarray
1.00 0.81 (0.001) 0.64 (0.002) 0.64 (0.005)
0.50 0.82 (0.001) 0.65 (0.004) 0.64 (0.003)
0.20 0.82 (0.002) 0.66 (0.005) 0.65 (0.005)
0.10 0.83 (0.002) 0.66 (0.005) 0.66 (0.003)
0.04 0.83 (0.001) 0.67 (0.004) 0.66 (0.004)