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Figure 1 | BMC Bioinformatics

Figure 1

From: A classification-based framework for predicting and analyzing gene regulatory response

Figure 1

Overview of GeneClass algorithm. (Left) Data representation for input to the GeneClass algorithm. P πe represents the states of the parents π in each experiment e. M μg represents the presence/absence of motifs μ in the promoter of genes g. y represents the label of each example with feature vector xg,e. (Right) The output of the algorithm is an alternating decision tree, which defines a prediction function for the up/down regulatory response of genes. Each splitter node represents a feature chosen by the algorithm, and the prediction node below it contains its prediction score.

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