Table 1 Stabilized trees. Top ten parents ranked by iteration score (IS) for alternating decision trees learned with and without stabilization. The stabilization uses parameters η1 = 0.01 and η2 = 0.03. (See Methods/Stabilization Section).
From: A classification-based framework for predicting and analyzing gene regulatory response
without stabilization | with stabilization | ||||
|---|---|---|---|---|---|
rank | parent | iteration score | rank | parent | iteration score |
1 | TPK1 | 1.400 ± 1.265 | 1 | TPK1 | 1.400 ± 1.265 |
2 | USV1 | 3.500 ± 1.434 | 2 | USV1 | 3.500 ± 1.434 |
3 | AFR1 | 6.800 ± 3.360 | 3 | AFR1 | 6.800 ± 3.360 |
4 | ATG1 | 11.800 ± 20.099 | 4 | ATG1 | 7.700 ± 7.747 |
5 | MDG1 | 12.100 ± 11.090 | 5 | MDG1 | 10.000 ± 9.369 |
6 | XBP1 | 17.800 ± 6.460 | 6 | XBP1 | 16.800 ± 5.287 |
7 | ETR1 | 41.400 ± 24.972 | 7 | CIN5 | 18.600 ± 7.604 |
8 | YJL103C | 45.000 ± 26.600 | 8 | GIS1 | 20.600 ± 12.607 |
9 | CIN5 | 56.100 ± 71.527 | 9 | SDS22 | 20.900 ± 11.406 |
10 | KIN82 | 57.800 ± 24.179 | 10 | YFL052W | 22.000 ± 6.815 |
11 | GAT2 | 58.800 ± 55.249 | 11 | YJL103C | 22.200 ± 4.803 |
12 | MSG5 | 61.700 ± 96.126 | 12 | KIN82 | 22.400 ± 3.806 |
13 | PDE1 | 65.200 ± 61.853 | 13 | PDE1 | 22.800 ± 9.426 |
14 | ASK10 | 68.300 ± 91.629 | 14 | SIP4 | 22.900 ± 8.478 |
15 | RME1 | 69.900 ± 23.572 | 15 | ETR1 | 24.000 ± 3.771 |
16 | YVH1 | 73.500 ± 24.865 | 16 | GAC1 | 24.400 ± 4.142 |
17 | MET28 | 86.300 ± 43.564 | 17 | GAT2 | 25.100 ± 5.666 |
18 | SDS22 | 86.800 ± 72.380 | 18 | HAP4 | 25.900 ± 6.173 |
19 | MTH1 | 91.900 ± 50.573 | 19 | SIP2 | 26.000 ± 6.146 |
20 | GPA2 | 92.800 ± 44.619 | 20 | MTL1 | 26.000 ± 6.146 |