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Table 2 The p-value distribution of sequence pairs in some GO groups on transporter activity branch.

From: The relationship between protein sequences and their gene ontology functions

GO ID1

p-values

GO group description

 

[1, 10-2)

[10-2, 10-5)

[10-5, 10-10)

[10-10, 10-20)

[10-20, 10-50)

[10-50, 10-100)

[10-100, 0]

 

* GO0005215(392)

94.13

3.68

0.66

0.42

0.52

0.26

0.33

transporter activity

** GO0042626(43)

85.6

2.1

2.21

4.1

2.21

1.99

1.77

ATPase activity, coupled to transmembrane movement of substances

*** GO0042625(30)

85.75

1.84

1.61

3.68

3.91

2.07

1.15

ATPase activity, coupled to transmembrane movement of ions

**** GO0019829(19)

92.4

2.92

0

1.75

1.75

0

1.17

cation-transporting ATPase activity

***** GO0046961(18)

92.16

2.61

0

1.96

1.96

0

1.31

hydrogen-transporting ATPase activity, rotational mechanism

**** GO0015662(12)

30.3

0

10.61

19.7

21.21

13.64

4.55

ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism

**GO0015267(11)

87.27

3.64

1.82

0

0

1.82

5.45

channel or pore class transporter activity

*** GO0015268(9)

88.89

5.56

2.78

0

0

2.78

0

alpha-type channel activity

**** GO0005216(7)

85.71

4.76

4.76

0

0

4.76

0

ion channel activity

** GO0015238(14)

41.76

10.99

15.38

12.09

10.99

1.1

7.69

drug transporter activity

*** GO0015239(11)

47.27

9.09

14.55

9.09

12.73

0

7.27

multidrug transporter activity

** GO0015144(27)

21.08

1.71

3.13

8.55

23.65

5.7

36.18

carbohydrate transporter activity

*** GO0051119(24)

0.36

1.81

3.62

10.87

30.07

7.25

46.01

sugar transporter activity

**** GO0015145(17)

0

0

0

0

0

11.03

88.97

monosaccharide transporter activity

***** GO0015149(17)

0

0

0

0

0

11.03

88.97

hexose transporter activity

****** GO0005354(6)

0

0

0

0

0

33.33

66.67

galactose transporter activity

****** GO0015578(15)

0

0

0

0

0

0

100

mannose transporter activity

****** GO0005353(15)

0

0

0

0

0

0

100

fructose transporter activity

****** GO0005355(16)

0

0

0

0

0

0

100

glucose transporter activity

** GO0015075(140)

95.6

3.02

0.16

0.29

0.37

0.2

0.36

ion transporter activity

*** GO0046873(38)

91.18

4.98

0.14

0.28

0.71

1.28

1.42

metal ion transporter activity

**** GO0046915(29)

88.67

6.9

0.25

0.25

0.49

1.48

1.97

transition metal ion transporter activity

***** GO0005375(8)

82.14

10.71

0

3.57

0

3.57

0

copper ion transporter activity

***** GO0005381(10)

75.56

6.67

0

0

0

8.89

8.89

iron ion transporter activity

*** GO0042625(30)

85.75

1.84

1.61

3.68

3.91

2.07

1.15

ATPase activity, coupled to transmembrane movement of ions

**** GO0019829(19)

92.4

2.92

0

1.75

1.75

0

1.17

cation-transporting ATPase activity

***** GO0046961(18)

92.16

2.61

0

1.96

1.96

0

1.31

hydrogen-transporting ATPase activity, rotational mechanism

**** GO0015662(12)

30.3

0

10.61

19.7

21.21

13.64

4.55

ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism

  1. 1The tree structure of the transporter activity branch is embedded in the first column of the table. The number of stars before a GO ID indicates the level of the GO group. If a group (A) is at one level higher than the group (B) on a row immediate above, A is a child of B. Otherwise, A is a sibling of the group that is at the same level as A and described on a nearest row above A. The numerical number in the parentheses after the GO ID represents the size of the group.
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BMC Bioinformatics

ISSN: 1471-2105

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