Table 2 Classification results (%) for largest 20 functional classes. Values in bold indicate the top performance in each row.
Functional Class | FNC | KNN | L-SVM | RBF-SVM |
|---|---|---|---|---|
Mitochondrion | 73.9 | 78.3 | 57.2 | 78.7 |
Cytoskeleton | 69.7 | 74.7 | 46.7 | 61.3 |
Nucleotide metabolism | 39.4 | 33.3 | 25.9 | 38.1 |
Protein targeting, sorting and translocation | 58.6 | 48.6 | 40.0 | 47.7 |
Protein degradation | 54.2 | 54.6 | 38.6 | 54.2 |
Cell growth/morphogenesis | 67.5 | 68.7 | 44.4 | 59.7 |
Lipid, fatty acid and isoprenoid metabolism | 31.5 | 29.9 | 29.3 | 34.4 |
Stress response | 57.2 | 58.7 | 36.9 | 55.0 |
Amino acid metabolism | 53.1 | 43.6 | 41.0 | 57.3 |
Cellular sensing and response | 63.1 | 62.7 | 47.8 | 56.8 |
Protein modification | 44.1 | 39.5 | 35.3 | 47.3 |
Ribosome biogenesis | 90.0 | 94.5 | 84.8 | 94.1 |
RNA processing | 50.7 | 48.4 | 31.6 | 47.7 |
DNA processing | 71.0 | 63.1 | 39.5 | 64.7 |
Transported compounds | 73.8 | 60.4 | 36.8 | 68.7 |
Fungal/microorganismic cell type differentiation | 73.5 | 76.2 | 45.6 | 66.0 |
C-compound and carbohydrate metabolism | 76.3 | 63.9 | 41.2 | 69.7 |
Cell cycle | 86.5 | 79.1 | 44.3 | 76.0 |
RNA synthesis | 83.1 | 64.3 | 33.7 | 66.5 |
Transport routes | 88.3 | 72.1 | 41.4 | 66.1 |
Average | 65.27 | 60.72 | 42.10 | 60.51 |