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Table 2 Comparison of number of haplotypes (|H|) on trio pedigrees

From: Estimate haplotype frequencies in pedigrees

Parameter settings (m, k)

directly

HANAP

 

P 1

P 2

P 3

P4

P1

P2

P 3

P 4

(20, 20)

3.18e4

3.43e2

2.06e6

1.02e6

5.83e2

72.2

1.12e2

76.4

(20, 100)

1.49e5

1.68e3

1.02e7

5.02e6

2.67e3

3.55e2

5.72e2

3.61e2

(20, 200)

2.56e5

3.30e3

2.02e7

0.98e7

4.45e3

5.96e2

1.14e3

6.02e2

(100, 20)

N/A

8.13e6

N/A

N/A

5.90e5

2.60e2

6.91e2

2.74e2

(100, 100)

N/A

1.62e7

N/A

N/A

2.68e6

1.31e3

3.42e3

1.52e3

(100, 200)

N/A

3.21e7

N/A

N/A

4.65e6

2.55e3

6.91e3

2.89e3

(200, 20)

N/A

N/A

N/A

N/A

N/A

7.92e2

6.08e3

1.07e3

(200, 100)

N/A

N/A

N/A

N/A

N/A

4.09e3

3.21e4

5.17e3

(200, 200)

N/A

N/A

N/A

N/A

N/A

7.79e3

6.22e4

1.03e4