Estimate haplotype frequencies in pedigrees

BMC Bioinformatics

Table 4 The frequencies of the 20 most frequent haplotypes found by HANAP

Id	Alleles of Marker Set	θ
1	CCAGGTAGCGCGAAGCATTTCTGTAGTACGA	0.037
2	CCAGGTAGCGCTCTAAGCAACTGGCGACGAG	0.043
3	CCCGGTGGTACGAAGCACAATCGGCGAACAC	0.025
4	CCCGGTGGTACGAAGCACAATCGTAGTACGA	0.102
5	CCCGGTGGTACGAGGTATCTCTAGCAGTCGT	0.016
6	CCCGGTGGTACGAGGTATCTCTAGCGACGAG	0.026
7	CTCGGTGGCGCGAGGTGTATCTATAAACGGC	0.023
8	CTCGGTGGCGCTCTAAGCAGCTGTAGATCGC	0.117
9	CTCGGTGGCGCTCTATGCAACTGGCGACGAG	0.178
10	GACGGTGATATGAGGTATCTCTAGCGTACGC	0.015
11	GACGGTGATATTCTAGGCTTTCGGAAACGAC	0.021
12	GCCGGTCGCGCGAGGCATATCTATAGATCGC	0.027
13	GCCGGTCGCGCTCTAAGCAGCTGTAAACGGC	0.022
14	GTATCGCATATGAAGCACAATCGGAAACGAC	0.078
15	GTATCGCATATGAGGTGTATCTAGAAACGAC	0.041
16	GTATCGCATATGAGGTGTATCTAGCAGTCGT	0.034
17	GTATCGCATATGCGGAGCCGTCAAAATTGGA	0.023
18	GTATCGCATATGCGGCGCCGTCAGAAACGAC	0.055
19	GTATCGCATATTCTAAGCAGCTGTAGATCGC	0.068
20	GTATCGCATATTCTAGGCTTTCGGAAACGAC	0.021
∑		0.97

ISSN: 1471-2105