FM-test: a fuzzy-set-theory-based approach to differential gene expression data analysis

BMC Bioinformatics

Table 2 Ten best-ranked and worst-ranked genes of diabetes identified by FM-test.

Probe Set	Gene Description	d-value	Empirical p-value	t-test p-value	rank sum p-value
U45973	Human phosphatidylinositol (4,5) bisphosphate	0.999	0.0003	0.0001	0.0076
M60858	Human nucleolin gene	0.935	0.0016	0.0017	0.0076
D85181	Homo sapiens mRNA for fungal sterol-C5-desaturase homolog	0.892	0.0028	0.0029	0.0147
M95610	Human alpha 2 type IX collagen (COL9A2) mRNA	0.872	0.0038	0.0066	0.0076
L07648	Human MXI1 mRNA	0.858	0.0043	0.0052	0.0076
L07033	Human hydroxymethylglutaryl-CoA lyase mRNA	0.855	0.0046	0.0054	0.0076
X53586	Human mRNA for integrin alpha 6	0.851	0.0047	0.0075	0.0076
X81003	Homo sapiens HCG V mRNA	0.791	0.0089	0.0077	0.0076
X57959	ribosomal protein L7	0.767	0.0108	0.0109	0.0313
U06452	melan-A	0.756	0.0126	0.0118	0.0311
X82324	POU domain, class 3, transcription factor 4	0.206	0.9987	0.407	1
M14764	nerve growth factor receptor (TNFR superfamily, member 16)	0.204	0.9989	0.652	1
M64673	heat shock transcription factor 1	0.204	0.9990	0.652	0.844
U20657	ubiquitin specific peptidase 4 (proto-oncogene)	0.197	0.9993	0.642	0.844
D17793	aldo-keto reductase family 1, member C3	0.196	0.9999	0.471	0.839
D78014	dihydropyrimidinase-like 3	0.194	1	0.620	0.548
AB002314	PDZ domain containing 10	0.191	1	0.367	0.545
L20348	oncomodulin	0.181	1	0.405	0.544
D50063	proteasome (prosome, macropain) 26S subunit	0.179	1	0.544	0.421
Z79581	H.sapiens LAZ3/BCL6 gene, first non coding exon	0.179	1	0.545	0.407

ISSN: 1471-2105