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Table 3 Results from comparison of proteins with internal repeats.

From: Projections for fast protein structure retrieval

PDB1 – PDB2

Matchprot (Lali/RMSD/Zscore)

Dali (Lali/RMSD/Zscore)

1gyhA – 1tl2A

179/3.36/7.79

196/3.9/7.4

1nscA – 3sil

291/2.99/37.52

289/3.2/23.5

1bd8 – 1ihbA

154/1.26/27.99

154/1.3/25.2

1l4aA – 1n7sA

62/1.58/5.61

62/1.7/5.6

2pec – 1bn8A

282/2.07/49.15

287/2.5/32.1

1kapP – 1sat

444/1.43/70.71

448/1.7/49.9

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BMC Bioinformatics

ISSN: 1471-2105

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