Table 2 Transcription factor enrichment of informative motifs
From: Bioinformatics analysis of the early inflammatory response in a rat thermal injury model
Transcription Factor | Motif 1 | Motif 2 | Motif 3 | Motif 4 |
|---|---|---|---|---|
AHR-arnt heterodimers and AHR-related factors | 0.00 | 0.37 | 0.45 | 0.36 |
E-box binding factor without transcript. activation | 0.03 | 0.74 | 0.78 | 0.78 |
Brn POU domain factors | 0.03 | 0.19 | 0.19 | 0.23 |
CAS interating zinc finger protein | 0.03 | 0.22 | 0.28 | 0.15 |
MYOblast Determining factor | 0.04 | 0.13 | 0.23 | 0.16 |
GC-Box factors_SP1/GC | 0.05 | 0.15 | 0.24 | 0.12 |
Cell cycle regulators: Cell cycle dependent element | 0.05 | 0.64 | 0.69 | 0.70 |
Promoter CCAAT binding factors | 0.08 | 0.20 | 0.16 | 0.31 |
RBPJ – kappa | 0.09 | 0.27 | 0.28 | 0.17 |
C-myb, cellular transcriptional activator | 0.28 | 0.00 | 0.28 | 0.15 |
CP2-erythrocyte Factor related to drosophila Elf1 | 0.24 | 0.00 | 0.26 | 0.36 |
Homeodomain factor aberrantly expressed in myeloid leukemia | 0.23 | 0.02 | 0.23 | 0.23 |
OCT1 binding factor (POU-specific domain) | 0.25 | 0.06 | 0.25 | 0.14 |
AP4 and Related proteins | 0.11 | 0.09 | 0.18 | 0.23 |
MAF and AP1 related factors | 0.27 | 0.09 | 0.27 | 0.23 |
NKX/DLX – homeodomain sites | 0.96 | 0.74 | 0.00 | 0.20 |
Interferon Regulatory Factors | 0.18 | 0.91 | 0.00 | 0.18 |
CLOX and CLOX homology (CDP) factors | 0.25 | 0.73 | 0.00 | 0.52 |
p53 tumor suppr.-neg. regulat. of the tumor suppr. Rb | 0.12 | 0.21 | 0.00 | 0.28 |
Basic and erythroid Krueppel like factors | 0.17 | 0.24 | 0.01 | 0.17 |
Pancreatic and intestinal homeodomain transcr. factor | 0.23 | 0.20 | 0.02 | 0.24 |
Microphthalmia transcription factor | 0.37 | 0.24 | 0.02 | 0.37 |
Human and murine ETS1 factors | 0.95 | 0.86 | 0.07 | 0.36 |
Regulator of B-Cell IgH transcription | 0.28 | 0.22 | 0.28 | 0.03 |
Hypoxia inducible factor, bHLH/PAS protein family | 0.37 | 0.36 | 0.43 | 0.04 |
E-box related factors | 0.37 | 0.36 | 0.37 | 0.07 |
ZF5 POZ domain zinc finger | 0.31 | 0.11 | 0.60 | 0.08 |
PAX-2 binding sites | 0.37 | 0.24 | 0.22 | 0.08 |
CCAAT/Enhancer Binding Protein | 0.16 | 0.19 | 0.23 | 0.09 |
E2F-myc activator/cell cycle regulator | 0.02 | 0.04 | 0.27 | 0.20 |
Vertebrate caudal related homeodomain protein | 0.04 | 0.05 | 0.23 | 0.23 |
FAST-1 SMAD interacting proteins | 0.08 | 0.05 | 0.13 | 0.12 |
AMV-viral myb oncogene | 0.10 | 0.04 | 0.11 | 0.20 |
Camp-Responsive Element Binding proteins | 0.08 | 0.17 | 0.08 | 0.12 |
Octamer binding protein | 1.00 | 0.00 | 0.03 | 0.96 |
AARE binding factors | 0.31 | 0.04 | 0.08 | 0.37 |
Nuclear Factor Kappa B/c-rel | 0.22 | 0.05 | 0.08 | 0.22 |
Zinc binding protein factor | 0.20 | 0.01 | 0.21 | 0.09 |
Hepatic Nuclear Factor 1 | 0.15 | 0.04 | 0.23 | 0.07 |