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Table 2 Identification results

From: SAMPI: Protein Identification with Mass Spectra Alignments

  

w/out intensity

w/intensity

  

Bruk.

PL

PL316

Bruk.

PL

PL316

Mascot v1.9

123

58

53

-

-

-

Mascot v2.1

119

59

53

-

-

-

SAMPI

      

c 1

c 2

      

-0.1

-0.1

112

56

51

72

106

87

-0.2

-0.2

111

56

51

78

96

92

-0.3

-0.3

96

54

48

65

103

98

-0.4

-0.3

89

53

48

52

110

105

-0.4

-0.4

91

54

49

54

108

103

-0.4

-0.5

94

53

48

57

109

104

  1. Number of correctly identified spectra in the Cg+SwissProt database, using Gaussian score, missing/additional peak penalties shown in first two columns. Three different peak lists are considered: Bruk: The peak lists by the Bruker software, PL and PL316 which refer to the peak lists by our detection algorithm where PL316 are restricted to the 316 out of 325 peak lists that the Bruker software also detected.