| |
HMM-d
|
HMM-t
|
HMM-ModE
|
HMM-Sub
|
|---|
|
2.7.1.100
|
19
|
16(0)
|
*
|
*
|
|
2.7.1.116
|
43
|
43(4)
|
*
|
*
|
|
2.7.1.117
|
103
|
103(8)
|
*
|
*
|
|
2.7.1.123
|
3392
|
529(120)
|
934(203)
|
3264
|
|
2.7.1.125
|
295
|
11(4)
|
11(4)
|
259
|
|
2.7.1.126
|
96
|
34(2)
|
34(2)
|
37
|
|
2.7.1.129
|
5
|
5(0)
|
*
|
*
|
|
2.7.1.137
|
135
|
135(29)
|
*
|
*
|
|
2.7.1.32
|
93
|
64(23)
|
*
|
*
|
|
2.7.1.38
|
2634
|
22(4)
|
22(4)
|
109
|
|
2.7.1.39
|
260
|
260(54)
|
*
|
*
|
|
2.7.1.67
|
57
|
57(15)
|
*
|
*
|
|
2.7.1.68
|
36
|
36(15)
|
*
|
*
|
|
2.7.1.82
|
45
|
31(10)
|
*
|
*
|
|
2.7.1.95
|
19
|
19(3)
|
*
|
*
|
|
2.7.9.1
|
171
|
169(55)
|
*
|
*
|
|
2.7.9.2
|
111
|
107(10)
|
*
|
*
|
- The numbers in the parentheses for HMM-ModE and HMM-t are the total counts of sequences annotated as hypothetical, putative, unknown and unnamed which have been classified by the two protocols. A "*" in the HMM-ModE and HMM-Sub columns indicates that the number of false positive sequences picked up by the HMMER profile from the negative training data were not sufficient to build a false positive profile.
