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Table 2 Increased transcript specificity by using the newly defined probe sets

From: Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays

 

Affymetrix Probe Sets

  

Redefined Probe Sets

 

Identifier

Fold

Gene symbol

No. of variants

Identifier

Fold

No. of variants

Transcripts

38010_at

2.2

BNIP3

3

b0805_15050

2.24

2

BNIP3: a, b

31852_at

2.06

ANKMY2

3

b0805_979

2.01

2

ANKMY2: a, b

36813_at

-3.15

TRIP13

3

b0805_19653

-3.94

2

TRIP13: a, e

38821_at

1.89

PGRMC2

3

b0805_3475

1.75

2

PGRMC2: a, d

33631_at

-1.78

TXNL4A

5

b0805_2958

-2.71

2

TXNL4A: d, e

40916_at

1.97

BEXL1

3

b0805_642

2.35

2

BEXL1: a, c

39109_at

-2.49

TPX2

4

b0805_8744

-2.44

2

TPX2: a, b

37985_at

-1.78

LMNB1

3

b0805_7685

-1.75

2

LMNB1: a, c

34363_at

2.33

SEPP1

3

b0805_18077

6.87

2

SEPP1: c, f

37582_at

2.06

KRT15

4

b0805_20129

2.04

2

KRT15: a, c

34805_at

-2.09

MGC2574

3

b0805_16254

-1.9

2

MGC2574: a, c

40117_at

-2.26

MCM6

2

b0805_21229

-2.38

1

MCM6: a

37005_at

2.35

NBL1

3

b0805_14295

2.34

2

NBL1: a, b

40710_at

1.78

CLGN

2

b0805_21744

1.9

1

CLGN: b

36591_at

-1.71

TUBA1

7

b0805_9382

-1.98

1

TUBA1: a

41583_at

-2.98

FEN1

3

b0805_6644

-2.79

2

FEN1: a, c

35367_at

1.73

LGALS3

8

b0805_18811

1.78

2

LGALS3: a, c

41274_at

1.7

DKFZp667G2110

2

b0805_4597

1.74

1

DKFZp667G2110: a

39329_at

-1.95

ACTN1

4

b0805_9591

-2.03

2

ACTN1: a, c

39809_at

2.19

HBP1

3

b0805_22136

2.17

2

HBP1: a, b

33891_at

2.77

CLIC4

2

b0805_15863

2.76

1

CLIC4: b

39441_at

2.92

LANCL1

2

b0805_1092

3

1

LANCL1: a

1884_s_at

-2.12

PCNA

5

b0805_5909

-2.04

2

PCNA: a, b

41747_s_at

2.67

MEF2A

2

b0805_21100

3.22

1

MEF2A: e

35767_at

1.82

GABARAPL2

3

b0805_5736

2.01

2

GABARAPL2: a, c

41415_at

-1.85

BYSL

3

b0805_3838

-2.07

2

BYSL: a, b

40414_at

-2.44

VARS

4

b0805_873

-2.34

2

VARS: a, g

38728_at

-2.06

NUP205

4

b0805_14227

-2.36

1

NUP205: a

39385_at

-2.6

ANPEP

3

b0805_3943

-2.59

1

ANPEP: a

  1. The probe set identifiers ending with "_at" are from Affymetrix; and those beginning with "b0805_" are newly defined here. Fold changes are ratios of the mean values of the treatment versus values of the control group, and the negative values indicate changes in the opposite direction.