Table 4 Comparison of method performance for residue prediction on a sample set of 75 proteins.
From: Selective prediction of interaction sites in protein structures with THEMATICS
Method | Recall (%) | Precision (%) | Filtration ratio (%) | False Positive Percent |
|---|---|---|---|---|
THEMATICS Z = 1.0 | 48.1 | 25.0 | 2.5 | 1.95 |
THEMATICS Z = 0.99 | 53.4 | 21.9 | 3.2 | 2.60 |
THEMATICS Z = 0.98 | 56.5 | 19.5 | 3.8 | 3.12 |
THEMATICS Z = 0.96 | 65.6 | 17.0 | 4.8 | 4.08 |
THEMATICS Z = 0.95 | 67.5 | 16.1 | 5.3 | 4.54 |
Q-SiteFinder (top 3 sites) | 65.6 | 5.4 | 14.9 | 14.3 |
SARIG | 57.4 | 8.1 | 8.7 | 8.15 |