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Table 3 LocusIDs and probe sets corresponding to the ten largest z-score variances for the LTP data set.

From: Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips

Z-score Variance

LocusID

Gene Symbol

Probe set ID

Z-score

Affymetrix Annotation Grade (Apr/06) [7]

Comments

18.4

24241

Calca/CGRP

1369116_a_at

-6.714

A

alt. splicing

   

1369117_at

0.164

A

 
   

1370775_a_at

-7.701

A

 

15.8

59329

Snf1lk

1368596_at

0.947

A

alt. poly(A)

   

1368597_at

-4.67

A

 

12.9

25513

Pik3r1

1370114_a_at

2.598

A

error

   

1371776_at

-2.479

E

 

12.6

316085

RGD1307844_predicted

1373605_at

0.712

A

indeterminate/error

   

1373920_at

-4.315

E

 

12.1

170796

Grin3b

1387559_at

-3.852

A

error

   

1388905_at

1.058

A

 

11.0

56827

Cacna1i

1369211_at

-4.51

A

alt. splicing

   

1370641_s_at

0.173

A

 

9.8

29415

Edg5

1367920_at

-4.581

A

alt. poly(A)

   

1386989_at

-0.157

A

 

9.1

192181

Podxl

1369895_s_at

1.951

A

alt. poly(A)

   

1387933_s_at

-2.313

A

 

9.0

311846

Lrrc8_predicted

1374296_at

-0.822

E

error?

   

1382920_at

-5.071

A

1374296_at beyond 3' end of RefSeq

8.6

114124

Akap1

1369069_at

1.653

A

alt. splicing

   

1388070_a_at

-2.494

A

Â