Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips

BMC Bioinformatics

Table 4 Z-scores and gene localization of probe sets mapping to the 3 top ranked LocusIDs for the LTP data set.

LocusID	Probe Set ID	Z-score	Region of gene covered by probes
24241	1369116_a_at	-6.714	exon 2, exon 3
	1369117_at	0.164	exon 4
	1370775_a_at	-7.701	exon5, exon 6
59329	1368596_at	0.947	exon 15, exon 16
	1368597_at	-4.67	exon 14
25513	1370114_a_at	2.598	chr2, reverse strand
	1371776_at	-2.479	chr2, forward strand

Alignment of the target sequences to the UCSC June 2003 rat genome assembly was performed using BLAT [19].

ISSN: 1471-2105