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Table 1 Accuracy of alignment constraints: Fraction of total number of alignment positions missed in 619941 tRNA pairwise alignments and 180901 5S RNA pairwise alignment in RFAM database.

From: Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign

  

New constraint

M constraint

Fraction of alignment positions missed

tRNA

2.2 × 10-4

2.9 × 10-3

 

5S RNA

2.0 × 10-4

4.4 × 10-3

  1. For the M constraint a value of M = 7 is chosen is chosen as established in [35]. New constraint refers to the probabilistic alignment constraint proposed in this paper.
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BMC Bioinformatics

ISSN: 1471-2105

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