Skip to main content

Table 2 Average, minimum, maximum sensitivity and specificity over tRNA and 5S RNA alignments in RFAM database for the proposed probabilistic alignment constraint (New constraint) and the previously employed M constraint.

From: Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign

   New constraint M constraint
sensitivity specificity sensitivity specificity
tRNA avg 0.999 0.827 0.997 0.816
  min 0.38 0.42 0.44 0.78
  max 1.00 0.99 1.00 0.85
5S RNA avg 0.999 0.924 0.995 0.883
  min 0.78 0.63 0.53 0.85
  max 1.00 0.98 1.00 0.88