Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign

BMC Bioinformatics

Table 9 Memory requirements (in megabytes of main memory) 5 different structure prediction methods on 5S RNAs and tRNAs alignments from [38] and [39]

A dual-core AMD Opteron^®-270 2.0 GHz system with 4 GBytes of main memory running Linux Fedora Core 4 was utilized for the timing experiments.

ISSN: 1471-2105