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Table 9 Memory requirements (in megabytes of main memory) 5 different structure prediction methods on 5S RNAs and tRNAs alignments from [38] and [39]

From: Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign

  tRNA 5S RNA
Min Max Avg Min Max Avg
Dynalign new constraint 9.360 13.592 10.988 10.176 17.436 12.277
Dynalign M constraint 10.528 12.040 10.960 12.664 14.840 14.306
StemLoc 41.440 750.660 252.246 94.300 2788.296 415.973
Consan 34.272 358.704 131.595 98.976 1676.492 317.303
FOLDALIGN 93.276 230.032 134.438 585.900 820.204 730.214
  1. A dual-core AMD Opteron®-270 2.0 GHz system with 4 GBytes of main memory running Linux Fedora Core 4 was utilized for the timing experiments.