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Figure 9 | BMC Bioinformatics

Figure 9

From: Multiple non-collinear TF-map alignments of promoter regions

Figure 9

The TRANSFAC predictions of bicoid (in green), hunchback (in blue) and Kruppel (in yellow) zygotic factors on the stripe 2 enhancer of the Even-skipped gene in D. melanogaster, D. yakuba, D. erecta and D. pseudoobscura (EVE, GenBank: AF042709, AF042710, AF042711 and AF042712), the resulting MMA and the experimental evidence. The TF-map alignment agrees well with the experimental annotation of the enhancer in D. melanogaster, as most experimentally annotated TFBSs are successfully covered by the MMAs. Non-collinear rearrangements in the MMA are denoted with a red square (see main text). The graphical representation of the maps and the alignments has been produced with the program gff2ps [27].

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