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Table 2 Comparative results with and without residue interface propensities on the four kinds of complexes.

From: Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins

   Precision Recall F1 Accuracy CC
Hetero permanent Non-proa 0.518 0.582 0.547 0.687 0.267
  AA-prob 0.514 0.590 0.548 0.684 0.265
Hetero transient Non-pro 0.414 0.563 0.475 0.643 0.204
  AA-pro 0.415 0.561 0.476 0.643 0.204
Homo permanent Non-pro 0.463 0.607 0.526 0.687 0.288
  AA-pro 0.474 0.617 0.536 0.693 0.303
Homo transient Non-pro 0.206 0.463 0.279 0.691 0.136
  AA-pro 0.260 0.465 0.327 0.743 0.195
  1. aThe features of SVM are Position-Specific Score Matrix (PSSM) and Accessible Surface Areas (ASA)
  2. bResidue interface propensity is inputted to SVM as an extra feature
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BMC Bioinformatics

ISSN: 1471-2105

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