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Table 2 Comparative results with and without residue interface propensities on the four kinds of complexes.

From: Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins

  

Precision

Recall

F1

Accuracy

CC

Hetero permanent

Non-proa

0.518

0.582

0.547

0.687

0.267

 

AA-prob

0.514

0.590

0.548

0.684

0.265

Hetero transient

Non-pro

0.414

0.563

0.475

0.643

0.204

 

AA-pro

0.415

0.561

0.476

0.643

0.204

Homo permanent

Non-pro

0.463

0.607

0.526

0.687

0.288

 

AA-pro

0.474

0.617

0.536

0.693

0.303

Homo transient

Non-pro

0.206

0.463

0.279

0.691

0.136

 

AA-pro

0.260

0.465

0.327

0.743

0.195

  1. aThe features of SVM are Position-Specific Score Matrix (PSSM) and Accessible Surface Areas (ASA)
  2. bResidue interface propensity is inputted to SVM as an extra feature
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BMC Bioinformatics

ISSN: 1471-2105

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