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Table 3 Cross-validation results with binary profile interface propensities

From: Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins

 

P h a

Nb

Precision

Recall

F1

Accuracy

CC

Hetero permanent

0.07

1558

0.599

0.700

0.644

0.735

0.396

Hetero transient

0.05

4662

0.501

0.756

0.602

0.697

0.379

Homo permanent

0.05

8639

0.546

0.734

0.626

0.745

0.435

Homo transient

0.08

129

0.277

0.551

0.363

0.747

0.250

  1. aThe optimal probability threshold P h of converting a frequency profile into a binary profile
  2. bThe number of binary profiles
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BMC Bioinformatics

ISSN: 1471-2105

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