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Table 5 Number of human interactions (true positives) predicted from BLAST with minimum E-value and InParanoid.

From: Reconstruction of human protein interolog network using evolutionary conserved network

Data sets

Predicted interologs

True positives

Putatives

Precision

Recall

BLAST

84,501

4,130

80,371

4.89%

-*

InParanoid (1-to-1 mapping)

36,376

1,918

34,458

5.27%

-*

InParanoid (1-to-many mapping, CS ≥ 0)

90,871

2,572

88,299

2.83%

-*

InParanoid (1-to-many mapping, CS ≥ 4)

19,659

1,467

18,192

7.46%

57.04%

  1. * : the predicted data set do not contain negative data to calculate false negative (FN) to obtain recall = (TP/(TP+FN))