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Table 5 Number of human interactions (true positives) predicted from BLAST with minimum E-value and InParanoid.

From: Reconstruction of human protein interolog network using evolutionary conserved network

Data sets Predicted interologs True positives Putatives Precision Recall
BLAST 84,501 4,130 80,371 4.89% -*
InParanoid (1-to-1 mapping) 36,376 1,918 34,458 5.27% -*
InParanoid (1-to-many mapping, CS ≥ 0) 90,871 2,572 88,299 2.83% -*
InParanoid (1-to-many mapping, CS ≥ 4) 19,659 1,467 18,192 7.46% 57.04%
  1. * : the predicted data set do not contain negative data to calculate false negative (FN) to obtain recall = (TP/(TP+FN))