Skip to main content

Table 6 Relationship between cut-off threshold and predicted human interactions (true positives).

From: Reconstruction of human protein interolog network using evolutionary conserved network

Cut-off threshold Predicted interologs True positives Putatives Precision Recall
CS ≥ 0 90,871 2,572 88,299 2.83% -*
CS ≥ 1 59,919 2,473 57,446 4.13% 96.15%
CS ≥ 2 41,828 2,222 39,606 5.31% 86.39%
CS ≥ 3 27,048 1,772 25,276 6.55% 68.90%
CS ≥ 4 19,659 1,467 18,192 7.46% 57.04%
CS ≥ 5 14,344 1,226 13,118 8.55% 47.67%
CS ≥ 6 11,334 1,021 10,313 9.01% 39.70%
CS ≥ 7 8,374 859 7,515 10.26% 33.40%
  1. * : the predicted data set do not contain negative data to calculate false negative (FN) to obtain recall = (TP/(TP+FN))