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Table 3 False negative (FN) vs. false positive (FP) rates on test and intergenic data sets for donor sites

From: A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana

FN(%)

FP(%)

 

GS-test

GS-intg

GSESE-test

GSESE-intg

0.5

11.06

17.99

9.11

12.84

1

7.58

13.11

6.24

9.35

2

5.33

9.75

4.10

6.34

3

4.21

7.99

3.25

5.08

5

2.94

5.86

2.20

3.77

7

2.22

4.65

1.62

2.95

10

1.61

3.58

1.15

2.27

15

1.03

2.48

0.74

1.58

20

0.73

1.86

0.52

1.20

  1. (b) Rates on test data are obtained from a 5-fold CV procedure on the ESEAra data set, while FP rates on intergenic data are averages of the FP rates obtained on INTAra by setting a threshold that would produce the same FN rate on each of the 5 fold test data.