TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets

Table 1 Description of the data set available in TISs-ST using a non-redundant set of genes.

Group type I (Phylum^aor Division^b)	Group type II (Class)	Species	Number of Sequences
Arthropoda^a	Insecta	Anopheles gambiae	599
		Bombyx mori	274
		Drosophila melanogaster	8821
Ascomycota^b	Sordariomycetes	Magnaporthe grisea	152
Bryophyta^b	Bryopsida	Physcomitrella patens	154
Chordata^a	Aves	Gallus gallus	3135
	Actinopterygii	Danio rerio	7074
		Oncorhynchus mykiss	367
		Oryzias latipes	171
	Amphibia	Xenopus laevis	7440
		Xenopus tropicalis	3336
	Mammalia	Bos taurus	2541
		Canis familiaris	322
		Homo sapiens	12387
		Mus musculus	11872
		Ovis aries	180
		Rattus norvegicus	8594
		Sus scrofa	603
Echinodermata^a	Echinoidea	Strongylocentrotus purpuratus	134
Magnoliophyta^b	Magnoliopsida	Arabidopsis thaliana	14525
		Brassica napus	182
		Glycine max	373
		Lycopersicon esculentum	511
		Malus × domestica	133
		Solanum tuberosum	281
	Liliopsida	Hordeum vulgare	334
		Oryza sativa	1090
		Triticum aestivum	315
		Zea mays	518
Nemata^a	Secernentea	Caenorhabditis elegans	3051
Platyhelminthes^a	Trematoda	Schistosoma japonicum	1093
		Schistosoma mansoni	135

The number of sequences represents the total of unique genes. The sequences were taken from a subset of the NCBI UniGene data set [23] (retrieved August, 2005). The taxonomic classification was based on the Integrated Taxonomic Information System on-line database [26]. For the group classification, the phylum or division, and the class were used for the taxonomic level.

ISSN: 1471-2105