BMC Bioinformatics

Table 2 Confusion matrix values and dependent parameters at each threshold value.

From: TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets

Score threshold	Positives tested (259)		Negatives tested (5692)		Accuracy	SN	SP	MCC
	TP	FN	TN	FP
≥ 70	79	180	5570	122	0.949	0.305	0.978	0.320
≥ 60	105	154	5456	236	0.934	0.405	0.958	0.319
≥ 50	131	128	5309	383	0.914	0.505	0.932	0.318
≥ 40	157	102	5159	533	0.893	0.606	0.906	0.326
≥ 30	183	76	4801	891	0.837	0.706	0.843	0.291
≥ 20	209	50	4414	1278	0.776	0.806	0.775	0.274
≥ 10	235	24	3600	2092	0.644	0.907	0.632	0.225

Values in parentheses indicate the number of proteins in each set.

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