AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions

Chew, David SH; Leung, Ming-Ying; Choi, Kwok Pui

doi:10.1186/1471-2105-8-163

BMC Bioinformatics

Table 2 Herpesviruses : HSS at 5% level using the conservative bound.

From: AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions

HSS				HSS
Virus	Start	Peak	Value	Virus	Start	Peak	Value
alhv1	1204	1370	54	ebv	11854	11950	45
	32478	32850	48		77111	77150	24
	113630	113684	46		43158	43235	23
	85923	85992	45	ehv1	20348	20431	47
	72999	73115	44		134195	134276	36
	125691	125726	31		65055	65126	35
athv3	8827	8892	40		99301	99374	34
bohv1	100410	100484	26		11034	11141	32
	109702	109730	25		105796	105862	30
	128487	128515	25		73653	73746	27
	16593	16626	21		113818	113849	25
	113720	113738	18		149310	149341	25
	124479	124497	18		110314	110352	23
	29	45	16		128924	128992	23
	58542	58569	15	ehv2	160281	160518	102
bohv4	60687	60826	35		86522	86622	76
bohv5	68440	68507	49		53843	54012	61
	113549	113583	28		140661	140826	57
	129429	129463	28		4580	4655	51
	592	616	21		171454	171529	51
	86191	86215	21		95342	95440	50
	102074	102106	17		10772	10820	48
	92511	92535	15		39893	39977	48
	120935	120959	15		177646	177694	48
	59921	59938	14		113310	113399	47
	17408	17433	13		134709	134772	45
	41883	41899	13		166114	166207	42
calhv3	70131	70198	31		45831	45965	41
ccmv	50872	50973	50		15443	15482	39
	158344	158701	45		19722	19845	39
	95375	95603	39		182317	182356	39
	3519	3602	35		153977	154145	36
	24084	24156	33		123321	123362	35
	182982	183136	31		147222	147341	35
	14314	14370	23		34816	34884	29
	177170	177247	23		76380	76454	29
	189041	189075	22		103167	103223	29
	147310	147384	20		64344	64402	25
cehv1	116723	116836	53		786	831	24
	92092	92118	26	ehv4	109852	110086	60
	61680	61700	20		19878	19943	50
	132785	132805	20		132383	132462	49
	149415	149435	20		105284	105365	48
	52055	52075	17		23895	24016	43
	42984	43006	16		3984	4110	42
	11389	11407	15		73340	73509	37
	24415	24441	14		98849	98930	33
cehv15	11965	12011	28		46612	46674	32
	114927	114988	19		10630	10697	31
cehv16	92913	92940	23		58833	58906	31
	62970	62991	21		82616	82701	31
	133468	133489	21		127230	127351	31
	149813	149834	21		112929	112967	29
	8303	8331	20		145082	145120	29
	118685	118713	20	gahv1	24852	24890	30
	53056	53100	18	gahv2	106724	106811	35
	25423	25473	16	gahv3	11168	11198	27
	1717	1736	15		122384	122414	27
	114861	114890	15		134414	134461	26
	125280	125299	15		162999	163046	26
	30975	30991	14		58953	58999	25
cehv2	7681	7738	33	hcmv	3402	3542	41
	115791	115848	33		186855	186995	41
	61483	61503	20		16757	16915	35
	129527	129547	20		96685	96824	34
	144461	144481	20		11713	11808	32
	90857	90884	19		198116	198171	31
	51884	51910	14		173560	173599	30
	93873	93887	14		210724	210781	30
	112292	112320	14		26361	26475	27
cehv7	86167	86296	37		108222	108303	24
cehv8	149643	149720	33		159296	159380	24
	15671	15733	30		71011	71055	23
	29233	29278	29		226192	226230	23
	163766	163806	28
	177904	178092	28
	89538	89589	27
hcmv-m	3798	3939	42	mfrv	128046	128640	114
	181238	181334	33		23139	23374	109
	97069	97206	32		2488	3068	106
	173950	173994	32		32573	33752	84
	216020	216077	30		64296	64454	62
	203400	203456	29		111496	111624	44
	17082	17297	26		72739	72809	43
	12060	12145	25		53766	53825	32
	157590	157726	25		69912	70061	32
hhv6	130410	130501	59		114828	114860	32
	3605	3712	51	mmrv	2388	2967	111
	154838	154945	51		23902	24187	108
	137079	137210	43		33761	35136	103
hhv6b	132997	133163	62		130346	131085	97
	139482	139569	51		65611	65853	56
	3911	3988	37		74140	74204	37
	157232	157309	37		71311	71462	31
hhv7	134169	134376	117		117507	117551	29
	128589	128984	70		112930	113033	28
hhv8	136287	136704	93	muhv4	6000	6037	29
	982	1125	44	ohv2	115365	115545	72
	58833	58906	28		126823	127116	68
	23547	23598	27		118943	118988	42
	30712	30775	27		72630	72699	36
	119416	119467	27		1269	1370	29
	106412	106452	25		27589	27633	29
hsv1	62465	62485	20		76335	76370	26
	35000	35034	19		79158	79265	26
	115242	115303	19	oshv1	73292	73460	64
	131990	132008	18		35416	35493	61
	144115	144142	18		146021	146164	55
	11705	11734	17		190174	190312	54
	52753	52818	17		195928	196026	54
	96047	96069	16		201648	201786	54
	136146	136162	16		23065	23135	50
hsv2	5584	5628	35		161395	161505	50
	121621	121665	35		2682	2735	49
	52978	53003	19		180276	180329	49
	91716	91747	19		108068	108173	45
	146600	146631	19		171433	171549	44
	95238	95256	18		67872	67975	43
	48761	48778	17		114689	114763	42
	62919	62939	17	pshv1	18751	18791	31
	132691	132711	17		121452	121486	31
	81195	81220	16		160685	160719	31
	99337	99370	15		130332	130365	27
ichv1	6068	6290	81		151806	151839	27
	121738	121960	81		23896	23942	22
	104134	104399	70		134013	134049	21
	17065	17333	58		78233	78256	20
	132735	133003	58	rcmv	150923	151612	92
	451	726	50		207600	207980	80
	116121	116396	50		143617	144150	74
	60752	60845	30		178241	178326	37
	42919	43007	28		214638	214702	37
	20109	20187	24		219069	219153	33
	10016	10063	23		201767	201885	28
	125686	125733	23		161797	161929	27
mcmv	155163	156341	125		171828	171870	27
					24072	24108	21
	161228	161391	40	sahv2	28533	28613	45
	115543	115640	37	shv1	63862	63892	24
	102865	102960	35		96251	96275	21
	79497	79573	34		114686	114715	20
	15628	15724	33		129607	129636	20
	144170	144290	33		50382	50407	19
	73525	73579	27		75955	75984	17
	39209	39248	24		16151	16172	15
	92997	93036	24		33045	33063	15
	219239	219282	22		109083	109098	15
mehv1		NIL			135503	135518	15
					8432	8455	14
				thv	168842	168927	25
					24153	24200	23
					28257	28286	17
				vzv	2574	2785	39
					110195	110227	32
					119669	119701	32

Entries in italics are significant at 1% too.

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