TY - JOUR AU - Herrero, J. AU - Al-Shahrour, F. AU - Diaz-Uriarte, R. AU - Mateos, A. AU - Vaquerizas, J. M. AU - Santoyo, J. AU - Dopazo, J. PY - 2003 DA - 2003// TI - GEPAS: a web-based resource for microarray gene expression data analysis JO - Nucleic Acids Research VL - 31 UR - https://doi.org/10.1093/nar/gkg591 DO - 10.1093/nar/gkg591 ID - Herrero2003 ER - TY - CHAP AU - Pelizzola, M. AU - Pavelka, N. AU - Foti, M. AU - Ricciardi-Castagnoli, P. PY - 2006 DA - 2006// TI - AMDA: an R package for the automated microarray data analysis BT - BMC Bioinformatics ID - Pelizzola2006 ER - TY - JOUR AU - Yeung, K. Y. AU - Ruzzo, W. L. PY - 2001 DA - 2001// TI - Principal component analysis for clustering gene expression data JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.9.763 DO - 10.1093/bioinformatics/17.9.763 ID - Yeung2001 ER - TY - JOUR AU - Eisen, M. B. AU - Spellman, P. T. AU - Brown, P. O. AU - Botstein, D. PY - 1998 DA - 1998// TI - Cluster analysis and display of genome-wide expression patterns JO - PNAS VL - 95 UR - https://doi.org/10.1073/pnas.95.25.14863 DO - 10.1073/pnas.95.25.14863 ID - Eisen1998 ER - TY - JOUR AU - Hartigan, J. A. AU - Wong, M. A. PY - 1979 DA - 1979// TI - A K-Means Clustering Algorithm JO - Applied Statistics VL - 28 UR - https://doi.org/10.2307/2346830 DO - 10.2307/2346830 ID - Hartigan1979 ER - TY - BOOK AU - Kohonen, T. PY - 2001 DA - 2001// TI - Self-Organizing Maps PB - Springer-Verlag CY - Berlin UR - https://doi.org/10.1007/978-3-642-56927-2 DO - 10.1007/978-3-642-56927-2 ID - Kohonen2001 ER - TY - JOUR AU - D'Alimonte, D. AU - Lowe, D. AU - Nabney, I. AU - Mersinias, V. AU - Smith, C. P. PY - 2005 DA - 2005// TI - MILVA: An interactive tool for the exploration of multidimensional microarray data JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti676 DO - 10.1093/bioinformatics/bti676 ID - D'Alimonte2005 ER - TY - JOUR AU - Taguchi, Y. AU - Oono, Y. PY - 2005 DA - 2005// TI - Relational patterns of gene expression via non-metric multidimensional scaling analysis JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti067 DO - 10.1093/bioinformatics/bti067 ID - Taguchi2005 ER - TY - CHAP AU - Strickert, M. AU - Teichmann, S. AU - Sreenivasulu, N. AU - Seiffert, U. ED - Duch, W. PY - 2005 DA - 2005// TI - High-Throughput Multi-Dimensional Scaling (HiT-MDS) for cDNA-Array Expression Data BT - Artificial Neural Networks: Biological Inspirations. Part I, LNCS 3696 ID - Strickert2005 ER - TY - CHAP AU - Strickert, M. AU - Sreenivasulu, N. AU - Seiffert, U. ED - Verleysen, M. PY - 2006 DA - 2006// TI - Sanger-driven MDSLocalize – A comparative study for Genomic Data BT - European Symposium on Artificial Neural Networks (ESANN) ID - Strickert2006 ER - TY - CHAP AU - Buja, A. AU - Swayne, D. AU - Littman, M. AU - Dean, N. AU - Hofmann, H. PY - 2004 DA - 2004// TI - Interactive Data Visualization with Multidimensional Scaling BT - Report, University of Pennsylvania ID - Buja2004 ER - TY - JOUR AU - Sreenivasulu, N. AU - Radchuk, V. AU - Strickert, M. AU - Miersch, O. AU - Weschke, W. AU - Wobus, U. PY - 2006 DA - 2006// TI - Gene expression patterns reveal tissue-specific signaling networks controlling programmed cell death and ABA-regulated maturation in developing barley seeds JO - The Plant Journal VL - 47 UR - https://doi.org/10.1111/j.1365-313X.2006.02789.x DO - 10.1111/j.1365-313X.2006.02789.x ID - Sreenivasulu2006 ER - TY - STD TI - 12k EST-Array[http://pgrc.ipk-gatersleben.de/seeds/12000_EST.php] UR - http://pgrc.ipk-gatersleben.de/seeds/12000_EST.php ID - ref13 ER - TY - JOUR AU - Zhou, X. AU - Kao, M. C. J. AU - Wong, W. H. PY - 2002 DA - 2002// TI - Transitive functional annotation by shortest-path analysis of gene expression data JO - PNAS VL - 99 UR - https://doi.org/10.1073/pnas.192159399 DO - 10.1073/pnas.192159399 ID - Zhou2002 ER - TY - JOUR AU - Martinetz, T. AU - Schulten, K. PY - 1991 DA - 1991// TI - A "Neural-Gas" Network Learns Topologies JO - Artificial Neural Networks VL - I ID - Martinetz1991 ER - TY - STD TI - Neural Gas Clustering with Correlation[http://pgrc-16.ipk-gatersleben.de/~stricker/ng/] UR - http://pgrc-16.ipk-gatersleben.de/~stricker/ng/ ID - ref16 ER - TY - JOUR AU - Manoli, T. AU - Gretz, N. AU - Grone, H. AU - Kenzelmann, M. AU - Eils, R. AU - Brors, B. PY - 2006 DA - 2006// TI - Group testing for pathway analysis improves comparability of different microarray datasets JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl424 DO - 10.1093/bioinformatics/btl424 ID - Manoli2006 ER - TY - JOUR AU - Finkelstein, R. AU - Gampala, S. AU - Rock, C. PY - 2002 DA - 2002// TI - Abscisic acid signaling in seeds and seedlings JO - Plant Cell VL - 14 ID - Finkelstein2002 ER - TY - JOUR AU - Halford, N. AU - Paul, M. PY - 2003 DA - 2003// TI - Carbon metabolite sensing and signaling JO - Biotechnology Journal VL - 1 ID - Halford2003 ER - TY - JOUR AU - Diaz, I. AU - Martinez, M. AU - Isabel-Lamoneda, I. AU - Rubio-Somoza, I. AU - Carbonero, P. PY - 2005 DA - 2005// TI - The DOF protein, SAD, interacts with GAMYB in plant nuclei and activates transcription of endosperm-specific genes during barley seed development JO - The Plant Journal VL - 42 UR - https://doi.org/10.1111/j.1365-313X.2005.02402.x DO - 10.1111/j.1365-313X.2005.02402.x ID - Diaz2005 ER - TY - JOUR AU - Gower, J. PY - 1966 DA - 1966// TI - Some distance properties of latent root and vector methods used in multivariate analysis JO - Biometrika VL - 53 UR - https://doi.org/10.1093/biomet/53.3-4.325 DO - 10.1093/biomet/53.3-4.325 ID - Gower1966 ER - TY - STD TI - High-Throughput Multidimensional Scaling (V2)[http://hitmds.webhop.net/] UR - http://hitmds.webhop.net/ ID - ref22 ER -