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Table 1 Functional groups found on the different chip platforms.

From: GOSim – an R-package for computation of information theoretic GO similarities between terms and gene products

Clust. no. Clust. size sil. ind. platform regulation function
9 27 0.62 cDNA up transport
13 10 0.93 cDNA up intracellular signaling cascade, protein transport
14 16 0.82 cDNA up cell adhesion
15 38 0.51 cDNA up transcription, signal transduction
16 5 0.58 cDNA up cytoskeleton organization and biogenesis, behavior
18 74 0.74 cDNA up transcription
20 15 0.67 cDNA up immune response
23 2 0.67 cDNA up catabolism
28 22 0.54 cDNA up protein localization
29 16 0.61 cDNA up protein modification
30 8 0.54 cDNA up chromatin assembly or disassembly, protein complex assembly
31 2 1.0 cDNA up mitochondrial electron transport, NADH to ubiquinone
33 2 0.62 cDNA up fibroblast growth factor receptor signaling pathway
2 25 0.79 cDNA down transcription
4 23 0.51 cDNA down transport
7 12 0.58 cDNA down immune response
4 19 0.73 Affymetrix up metabolism, transport
5 4 0.66 Affymetrix up blood coagulation, immune response
8 45 0.54 Affymetrix up transcription
12 11 0.92 Affymetrix up cell adhesion
2 12 0.52 Affymetrix down metabolism