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Table 2 Summary of comparisons. For each comparison, this table shows the 10 most frequent genes along the first 50 best triples ranked by bolstered error and score. Avg. Error = bolstered error; Avg. Dist. = average distance of the nearest point from the hyperplane; std. dev. = standard deviation.

From: A feature selection approach for identification of signature genes from SAGE data

Comparison normal × glio normal × astro, glio astro 2 × astro 3 astro 2 × astro3, glio astro 3 × glio astro 2, astro3 × glio
Ranked by avg. bolstered error
Avg. Error (std. dev.) 0.0 (0.0) 0.0 (0.0) 0.003 (0.0) 0.016 (0.003) 0.022 (0.004) 0.031 (0.003)
Avg. Dist. (std. dev.) 59.217 (90.175) 21.76 (0.35) 2.194 (0.297) 1.095 (0.222) 1.115 (0.256) 0.785 (0.199)
1 ITPKA CPNE7 SCN4B LOC646999 COPS5 COPS5
2 CPNE7 AK055475 GPX2 RPM2B WASF1 ZDHHC22
3 NDFIP2 TAIP-2 ZNF233 AK090819 SAP18 BC035881
4 KIAA1345 PCDH9 APBA3 RALGPS1 VPS35 WASF1
5 HLF LCE2D HSU79275 RP1-32F7.2 CHGB PRPF39
6 FLJ31636 AK095013 LRRC50 HSU79275 FLJ31818 LHFPL2
7 BX648951 C1QL2 HNF4G LRRC50 MORF4L1 ZNF644
8 CYP7B1 LOC36003 RAET1E FLJ20323 FLJ39538 POLDIP3
9 BC042456 GPR97 AX090819 DUSP9 ZNF233 ZBTB5
10 PIK3C3 GSTO2 MRC2 WDR35 DNASE2 LRP12
Ranked by score
Avg. Error (std. dev.) 0.0 (0.0) 0.0 (0.0) 0.006 (0.003) 0.021 (0.006) 0.028 (0.007) 0.033 (0.005)
Avg. Dist (std. dev.) 18.48 (1.17) 10.03 (0.23) 1.91 (0.23) 0.91 (0.32) 1.02 (0.28) 0.83 (0.21)
1 RPH3A CALM3 APBA3 RRM2B WASF1 COPS5
2 ITPKA SEPT5 PARVA RALGPS1 SAP18 ZDHHC22
3 HLF EEF1A2 BC023565 PDE8A COPS5 BC035881
4 NDFIP2 LCE2D BC015762 BDP1 ZDHHC22 SAP18
5 SH3GL2 PPP2R4 DNASE2 RP1-32F7.2 BC035881 ANAPC13
6 SYT13 SULT4A1 KBTBD6 TMEFF1 LRP4 LRP4
7 BCL2L2 ATP1A3 KCTD9 BC023565 JPH4 JPH4
8 MGC34830 VMP ZNF354C BC015762 CHGB PRPF39
9 PLEKHB2 PNMA6A C15orf29 ZNF354C ANAPC13 LHFPL2
10 DSCR1L1 FBXO2 SHOC2 C15orf29 POLDIP3 SSR3