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Table 2 Conditional entropies and their significances for isochore segmentations with 114 segments

From: Comparing segmentations by applying randomization techniques

P H (T|P) p p k H (P|T) p p k
L gc 0.740 0 0 0.683 0 0
L 2 0.688 0 0 0.771 0 0
L 1 0.750 0 0 0.778 0 0
L A 0.937 0.0352 0.0389 0.876 0.0010 0.0090
L C 0.797 0 0 0.684 0 0
L G 0.836 0.0002 0.0004 0.821 0.0001 0.0005
L T 0.984 0.1758 0.1748 0.840 0.0002 0.0010
  1. Conditional entropies and entropy distances for segmentations on isochore structure, for the ground truth segmentation from [20] with k = 114. L f : least-squares segmentation with features f; f {gc, 2, 1, A, C, G, T} indicate frequencies of G+C, 2-letter words, 1-letter words, and frequency of A, C, G, or T, respectively, p : the fraction of segmentations from C N , k , MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaaruWrPXgBtfMBZbaceaGae83qam0aaSbaaSqaaGqaciab+5eaoHqaaiab9XcaSiab+TgaRjab+XcaSiabloriSbqabaaaaa@3698@ with a smaller value of the conditional entropy in 10,000 randomizations; p k : the fraction of segmentations from C N , k MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaaruWrPXgBtfMBZbaceaGae83qam0aaSbaaSqaaGqaciab+5eaoHqaaiab9XcaSiab+TgaRbqabaaaaa@348B@ with a smaller value of the conditional entropy in 10,000 randomizations.