Identification of sequence motifs significantly associated with antisense activity

BMC Bioinformatics

Table 1 Complete list of motifs associated with effective antisense suppression

Motifs associated with effective antisense activity, sorted by length
2	3	4		5
CA	ACC	AACC	CCTC	AAACG	CATCG	CCGGG	CTCCC	GTCAC
CC	CAC	AACG	CGCC	AACCA	CATGT	CCGTG	CTCCG	GTCCC
CG	CCA	ACCA	CGCT	AACCC	CCAAC	CCTAC	CTCGT	GTGTC
CT	CCC	ACCC	CGTC	AACGA	CCACC	CCTCC	CTCTC	GTGTG
GC	CCG	ACCT	CGTG	ACCAT	CCACG	CCTGT	CTGTG	TACCA
TC	CCT	ACTC	CTCC	ACCCT	CCACT	CCTTG	GAACG	TACCC
	CGC	AGCC	GCCA	ACCGG	CCATC	CGACC	GACCG	TCCAC
	CGT	AGCT	GCCC	ACCTA	CCCAA	CGACG	GATAG	TCCCC
	CTC	ATCG	GCGT	ACGAA	CCCAC	CGATG	GCAAG	TCCCG
	GCC	CACC	GTCC	ACGCA	CCCAT	CGCAA	GCCAC	TCCCT
	GCT	CACT	TACC	ACGCG	CCCCA	CGCCC	GCCTC	TCCGC
	TCC	CATC	TCCC	ATACC	CCCCC	CGCCT	GCGAC	TCCGT
	TGC	CCAC	TCCG	ATCCC	CCCGC	CGCGA	GCGCT	TCGTC
		CCAT	TCGT	ATCGC	CCCTC	CGGTA	GCGTC	TCTCG
		CCCA	TCTC	ATCTC	CCCTG	CGTAC	GCGTT	TGATA
		CCCC	TGTC	CAACC	CCCTT	CGTCC	GCTAA	TGCGC
		CCCG	TGTG	CAAGC	CCGAC	CGTGA	GGCCA	TGTGT
		CCCT	TTGC	CACCA	CCGCC	CGTGC	GGCGT	TTGCG
		CCGC		CACTC	CCGCG	CTACC	GGGCC	TTGGC
				CATCC	CCGCT	CTCAG	GGTCC

ISSN: 1471-2105