Table 2 Complete list of motifs associated with ineffective antisense suppression
From: Identification of sequence motifs significantly associated with antisense activity
Motifs associated with ineffective antisense activity, sorted by length | ||||||||
|---|---|---|---|---|---|---|---|---|
2 | 3 | 4 | 5 | |||||
AA | AAA | AAAA | GCGG | AAAAA | AGAAA | CGATA | GGGGC | TATGA |
AT | AAG | AAAG | GGAA | AAAAG | AGGGA | CGCTA | GGGGG | TATTA |
GA | AAT | AAAT | GGAG | AAACA | AGGGG | CGGGG | GGGGT | TATTG |
GG | AGG | AACA | GGGA | AAAGA | ATAAA | CGGTT | GGTAG | TATTT |
TA | ATA | AAGA | GGGG | AAAGT | ATAAC | CGTAA | GGTTA | TCAAA |
TT | ATT | AATA | GTTA | AAATA | ATAAT | CGTGT | GTAAG | TCAAT |
| Â | GAA | AATC | TAAA | AAATG | ATACG | CTATA | GTAGG | TCTAG |
| Â | GGA | AATG | TAAT | AAATT | ATAGA | CTATC | GTGGG | TCTTA |
| Â | GGG | AATT | TACG | AACAA | ATAGG | CTCAC | GTGTA | TGGAT |
| Â | TAA | ACAA | TACT | AACTA | ATATA | CTGGG | GTTAT | TGGGG |
| Â | TAG | ACTA | TAGA | AAGAA | ATATT | CTTAC | TAAAA | TTAAA |
| Â | TAT | AGAA | TAGG | AAGAT | ATCCG | CTTCG | TAAAC | TTAAC |
| Â | TTA | AGAT | TATA | AAGCG | ATCGA | GAAAA | TAAAG | TTAAT |
| Â | TTT | AGGA | TATT | AATAA | ATTAA | GAAAG | TAAAT | TTACA |
| Â | Â | AGGG | TCAA | AATAG | ATTAG | GAATA | TAATA | TTACG |
| Â | Â | ATAA | TCTA | AATAT | ATTAT | GACGA | TAATC | TTACT |
| Â | Â | ATAT | TCTT | AATCA | ATTGA | GATAA | TAATG | TTAGT |
| Â | Â | ATTA | TGGG | AATCT | ATTTA | GATTA | TAATT | TTATA |
| Â | Â | ATTT | TTAA | AATGG | ATTTG | GCGCG | TACGT | TTATT |
| Â | Â | CAAT | TTAC | AATTA | ATTTT | GCGGC | TACTT | TTCGA |
| Â | Â | CATA | TTAT | AATTG | CAAAT | GCGGG | TAGAA | TTCTT |
| Â | Â | GAAA | TTCG | AATTT | CAATA | GGAAT | TAGAT | TTTAA |
| Â | Â | GACG | TTTA | ACAAA | CATTA | GGACA | TAGGT | TTTAC |
| Â | Â | GATT | TTTT | ACAAT | CATTT | GGATC | TAGTT | TTTAT |
| Â | Â | Â | Â | ACATA | CCGGC | GGGAC | TATAA | TTTTA |
| Â | Â | Â | Â | ACTAC | CGAGC | GGGCG | TATAT | TTTTT |
| Â | Â | Â | Â | ACTAT | CGAGT | GGGGA | TATCA | Â |