Table 2 Evaluation of best motifs. Best motifs predicted by Matlign and the individual motif prediction tools. Rank and Hits indicate the rank of the motif in the original analysis and the number of motif instances with raw score higher than or equal to 6, respectively. The significance of the motifs was determined using Clover [26].
From: MATLIGN: a motif clustering, comparison and matching tool
Program | Rank | Consensus | Hits | Raw score | P-value |
|---|---|---|---|---|---|
Matlign, node_nro119 | - | AYTCCGCGGARM | 19 | 40.8 | <0.0001 |
MotifSampler | 44 | TCCGyGGA | 24 | 31.9 | <0.0001 |
oligo-analysis | 2 | CCGCGGAA | 9 | 29.6 | <0.0001 |
POCO | 37 | TCCGNGGA | 24 | 27.1 | <0.0001 |