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Figure 7 | BMC Bioinformatics

Figure 7

From: Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?

Figure 7

Boxplots showing the range in sensitivity and positive predictive value (PPV) for the twelve predicted 5S rRNA structures from the final alignment and consensus predictions of all runs with gap penalty ≥ 2.0 kcal/mol, defined by the algorithm used to build the guide tree. NJ is neighbor-joining, CW is Clustal W, B1, B2 and B3 represent the 3 runs with balanced guide trees, while L1, L2 and L3 represent the 3 runs with linear guide trees. Undefined PPV values are plotted as zero.

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