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Table 3 Comparing the structure prediction performance of PMmulti, RNAalifold and Profile-Dynalign on the tRNA and 5S data sets.

From: Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?

  tRNA 5S
Method % Sens % PPV MCC % Sens % PPV MCC
PMmulti 30.0 100.0 0.548 36.8 88.9 0.572
Profile-Dynalign 80.0 100.0 0.894 35.9 94.7 0.583
Clustal W + RNAalifold 55.8 83.7 0.680 86.5 80.3 0.833
PMmulti + RNAalifold 55.4 88.3 0.697 96.6 85.3 0.908
Profile-Dynalign + RNAalifold 85.0 100.0 0.922 66.1 80.5 0.729