Table 3 Comparing the structure prediction performance of PMmulti, RNAalifold and Profile-Dynalign on the tRNA and 5S data sets.
| Â | tRNA | 5S | ||||
|---|---|---|---|---|---|---|
Method | % Sens | % PPV | MCC | % Sens | % PPV | MCC |
PMmulti | 30.0 | 100.0 | 0.548 | 36.8 | 88.9 | 0.572 |
Profile-Dynalign | 80.0 | 100.0 | 0.894 | 35.9 | 94.7 | 0.583 |
Clustal W + RNAalifold | 55.8 | 83.7 | 0.680 | 86.5 | 80.3 | 0.833 |
PMmulti + RNAalifold | 55.4 | 88.3 | 0.697 | 96.6 | 85.3 | 0.908 |
Profile-Dynalign + RNAalifold | 85.0 | 100.0 | 0.922 | 66.1 | 80.5 | 0.729 |