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Table 2 Discrimination and motif discovery scores on algorithm benchmark suite. Average nCC-scores for de novo motif discovery with MEME and Weeder compared to best discrimination scores on our proposed algorithm benchmarks and remaining 64 datasets.

From: Improved benchmarks for computational motif discovery

 

Algorithm suite (Real)

Remaining data sets (Real)

Algorithm suite (Markov)

MEME

0.068

0.029

0.082

Weeder

0.11

0.10

0.052

Disc.

0.92

0.64

0.92