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Table 4 Number of significantly correlated PPIs or GGIs found from each dataset.

From: Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data

GEO

Data Set

Significant

PPIs

Significant

GGIs

GDS1023

42

2

GDS1036

70

13

GDS1062

148

13

GDS1064

46

20

GDS1067

167

86

GDS1096

248

28

GDS1209

344

68

GDS1220

297

36

GDS1257

54

26

GDS1259

20

4

GDS1282

84

24

GDS1321

121

18

GDS1331

18

2

GDS266

7

0

GDS268

3

0

GDS395

476

35

GDS558

160

26

GDS564

13

0

GDS596

737

455

GDS690

462

163

GDS715

866

754

GDS737

7

1

GDS760

109

19

GDS810

33

4

GDS914

13

1

GDS946

22

5

GDS987

464

115

GDS999

263

56

GDS999

263

56

  1. Protein pairs with the false discovery rate of PCC value less than 0.1 were deemed as significantly correlated pairs. 'Significant PPIs' are pairs detected by the PPI calculation; 'Significant GGIs' are those detected by the GGI calculation.
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BMC Bioinformatics

ISSN: 1471-2105

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