Figure 1From: MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS dataSchematic overview of the analysis pipeline of MASPECTRAS. Search results from SEQUEST, Mascot, Spectrum Mill, X! Tandem, and OMSSA are imported and parsed. In the next steps peptides are validated using PeptideProphet [37] and the corresponding proteins clustered based on Markov clustering using BLAST [38], the sequences are aligned with CLUSTAL W [39]. Then the peptides are quantified using the ASAPRatio algorithm [41], the results stored in the database and exported to the public repository PRIDE [7].Back to article page