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Table 2 The comparison of the results obtained from the web-servers using known structures

From: TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences

PDB-ID Name Repeat Type Actual Repeats TPRpred Pfam SMART REP
Structures used in profile generation by TPRpred
1A17 Protein phosphatase 5 TPR 3 3 3 3 0
1KT1 Fkbp51 TPR 3 3 2 2 3
1ELR Hop(TPR2a domain) TPR 3 3 3 3 3
1IHG Cyclophilin 40 TPR 3 3 3 3 3
1ELW Hop (TPR1 domain) TPR 3 3 3 3 3
1HH8 P67phox TPR 3 3 3 3 3
1FCH* PEX5 (Human) TPR 7 7 4 4 6
1HXI Pex5 (Trypanosoma) TPR 3 3 3 3 3
1KLX Hcpb SEL1 3 3 3 3 3
1OUV Hcpc 1+6 7 1+6 1+6 7 7
Total    38 38 34 33 27
% of total     100% 89% 86% 71%
Structures not used in profile generation by TPRpred
1P5Q Fkbp52 TPR 3 3 3 3 3
2C2L CHIP TPR 3 3 3 3 3
1XNF* Nlpi TPR 4 4 3 3 3
1W3B* GlcNAc transferase TPR 10 10 9 9 9
1TJC* Collagen Hydroxylase TPR 2 2 1 1 0
1HZ4 MalT TPR 8 8 0 0 0
1NZN Fis1 TPR 2 1 0 0 0
1ZU2 Tom20(Plant) TPR 2 2 0 0 0
1ZBP VPA1032 TPR 1 1 0 0 0
Total    35 34 19 19 18
% of total     97% 54% 54% 51%
  1. * Structures shown in Figure 3
  2. TPR
  3. SEL1-like repeat
  4. See also Figure 3. The actual number of repeats for each entry and the number of repeats detected by various web-servers are tabulated.