Table 2 The comparison of the results obtained from the web-servers using known structures
From: TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences
PDB-ID | Name | Repeat Type | Actual Repeats | TPRpred | Pfam | SMART | REP |
|---|---|---|---|---|---|---|---|
Structures used in profile generation by TPRpred | |||||||
1A17 | Protein phosphatase 5 | TPR | 3 | 3 | 3 | 3 | 0 |
1KT1 | Fkbp51 | TPR | 3 | 3 | 2 | 2 | 3 |
1ELR | Hop(TPR2a domain) | TPR | 3 | 3 | 3 | 3 | 3 |
1IHG | Cyclophilin 40 | TPR | 3 | 3 | 3 | 3 | 3 |
1ELW | Hop (TPR1 domain) | TPR | 3 | 3 | 3 | 3 | 3 |
1HH8 | P67phox | TPR | 3 | 3 | 3 | 3 | 3 |
1FCH* | PEX5 (Human) | TPR | 7 | 7 | 4 | 4 | 6 |
1HXI | Pex5 (Trypanosoma) | TPR | 3 | 3 | 3 | 3 | 3 |
1KLX | Hcpb | SEL1 | 3 | 3 | 3 | 3 | 3 |
1OUV | Hcpc | 1†+6‡ | 7 | 1†+6‡ | 1†+6‡ | 7‡ | 7† |
Total | 38 | 38 | 34 | 33 | 27 | ||
% of total | 100% | 89% | 86% | 71% | |||
Structures not used in profile generation by TPRpred | |||||||
1P5Q | Fkbp52 | TPR | 3 | 3 | 3 | 3 | 3 |
2C2L | CHIP | TPR | 3 | 3 | 3 | 3 | 3 |
1XNF* | Nlpi | TPR | 4 | 4 | 3 | 3 | 3 |
1W3B* | GlcNAc transferase | TPR | 10 | 10 | 9 | 9 | 9 |
1TJC* | Collagen Hydroxylase | TPR | 2 | 2 | 1 | 1 | 0 |
1HZ4 | MalT | TPR | 8 | 8 | 0 | 0 | 0 |
1NZN | Fis1 | TPR | 2 | 1 | 0 | 0 | 0 |
1ZU2 | Tom20(Plant) | TPR | 2 | 2 | 0 | 0 | 0 |
1ZBP | VPA1032 | TPR | 1 | 1 | 0 | 0 | 0 |
Total | 35 | 34 | 19 | 19 | 18 | ||
% of total | 97% | 54% | 54% | 51% | |||