Skip to main content

Table 1 The TRN used for the synthetic example.

From: Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory

 

T1

T2

T3

T4

T5

T6

T7

T6

T9

T10

G1

-1

0

0

0

0

0

0

0

0

-1

G2

0

-1

0

0

0

0

0

0

0

1

G3

0

0

-1

0

0

0

1

0

0

0

G4

0

0

0

-1

0

0

0

0

0

0

G5

0

0

0

0

-1

0

0

0

0

0

G6

0

0

0

0

0

-1

0

0

0

0

G7

0

0

0

-1

0

0

-1

0

0

0

G8

0

0

0

0

0

0

0

-1

0

0

G9

0

0

0

0

0

0

0

0

-1

0

G10

0

0

0

0

0

-1

0

0

0

-1

G11

-1

0

0

0

0

0

0

0

0

-1

G12

0

-1

0

0

0

1

0

0

0

1

G13

0

0

-1

0

1

0

1

0

0

0

G14

0

0

0

-1

0

0

0

0

0

0

G15

-1

0

0

0

1

0

0

0

0

0

G16

0

0

0

0

0

1

0

0

0

0

G17

0

0

0

-1

0

0

-1

0

0

0

G18

0

0

0

0

0

0

0

1

0

0

G19

0

0

0

0

0

0

0

0

1

0

G20

0

0

0

0

0

1

0

0

0

1

  1. Columns indicate the TFs whereas the rows indicate the genes that they affect (-1 for down regulation, +1 for up regulation, 0 for no interaction)