Table 2 In order to test our approach for a large number of TF-gene interactions that might be suggested by sequence analysis or uncertain experimental data, we increased the number of interactions systematically by introducing additional random interactions.
| Â | T1 | T2 | T3 | T4 | T5 | T6 | T7 | T8 | T9 | T10 |
|---|---|---|---|---|---|---|---|---|---|---|
G1 | -1 | 1 | -1 | 1 | 1 | 1 | 1 | -1 | -1 | -1 |
G2 | 1 | -1 | 1 | -1 | -1 | 1 | 1 | -1 | 1 | 1 |
G3 | 1 | 1 | -1 | -1 | -1 | -1 | 1 | 1 | 1 | 1 |
G4 | 1 | 1 | -1 | -1 | 1 | -1 | -1 | 1 | -1 | -1 |
G5 | 1 | 1 | 1 | -1 | -1 | -1 | -1 | -1 | 1 | -1 |
G6 | -1 | -1 | 1 | 1 | -1 | -1 | 1 | 1 | -1 | 1 |
G7 | 1 | -1 | 1 | -1 | 1 | -1 | -1 | -1 | -1 | 1 |
G8 | 1 | -1 | 1 | 1 | -1 | -1 | -1 | -1 | 1 | 1 |
G9 | 1 | 1 | -1 | -1 | -1 | 1 | 1 | -1 | -1 | 1 |
G10 | -1 | 1 | 1 | 1 | -1 | -1 | 1 | 1 | -1 | -1 |
G11 | -1 | -1 | -1 | 1 | -1 | 1 | -1 | 1 | -1 | 1 |
G12 | -1 | -1 | 1 | 1 | 1 | 1 | -1 | 1 | -1 | 1 |
G13 | 1 | 1 | 1 | 1 | 1 | -1 | 1 | -1 | 1 | 1 |
G14 | 1 | -1 | -1 | -1 | 1 | 1 | -1 | 1 | -1 | -1 |
G15 | -1 | 1 | 1 | -1 | 1 | -1 | - 1 | 1 | 1 | 1 |
G16 | -1 | 1 | -1 | 1 | 1 | 1 | 1 | -1 | -1 | -1 |
G17 | 1 | 1 | 1 | -1 | -1 | 1 | 1 | 1 | -1 | 1 |
G18 | 1 | 1 | 1 | -1 | -1 | 1 | 1 | 1 | -1 | 1 |
G19 | 1 | -1 | 1 | -1 | -1 | -1 | - 1 | 1 | 1 | 1 |
G20 | -1 | 1 | 1 | 1 | -1 | 1 | - 1 | 1 | 1 | 1 |