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Table 4 Percentage of residues on which Porter_H and PaleAle_H disagree with the template-based part of their input (profile of secondary structure/solvent accessibility frequency from templates, in which each template is weighed by its cubed sequence similarity to the query – see Methods section for details).

From: Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information

  Porter_H PaleAle_H
e < 0.01 8.6% 14.4%
e > 0.01 30.8% 21.6%
All 9.9% 21.2%
  1. Results on all residues for which a template exists (All), residues for which a template exists with BLAST e-value smaller than 0.01 (e < 0.01) and all residues for which a template exists after having removed templates with BLAST e-value smaller than 0.01 (e > 0.01). Results in 5-fold cross-validation on the S2171 set (see text for details).