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Table 4 Percentage of residues on which Porter_H and PaleAle_H disagree with the template-based part of their input (profile of secondary structure/solvent accessibility frequency from templates, in which each template is weighed by its cubed sequence similarity to the query – see Methods section for details).

From: Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information

 

Porter_H

PaleAle_H

e < 0.01

8.6%

14.4%

e > 0.01

30.8%

21.6%

All

9.9%

21.2%

  1. Results on all residues for which a template exists (All), residues for which a template exists with BLAST e-value smaller than 0.01 (e < 0.01) and all residues for which a template exists after having removed templates with BLAST e-value smaller than 0.01 (e > 0.01). Results in 5-fold cross-validation on the S2171 set (see text for details).
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BMC Bioinformatics

ISSN: 1471-2105

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