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Table 2 BLAST scores of added reactions in E. coli

From: Optimization based automated curation of metabolic reconstructions

Reactions E Value Best hit in E. coli Organism
formiminoglutamate hydrolase 9e-13,3e-17 arginase/agmatinase/formimionoglutamate hydrolase Bacillus subtilis
Histidase 3.8, 0.003 Putative formate acetyltransferase 3 Bacillus subtilis
imidazolone-5-propionate hydrolase 0.007,3e-07 guanine deaminase Bacillus subtilis
inositol-1-phosphate synthase no similarity hypothetical protein EcolE_01002634 Mycobacterium tuberculosis
phenylalanine ammonia lyase 8.6, 3e-04 Ornithine/acetylornithine aminotransferase Arabidopsis thaliana
phenylpyruvate decarboxylase 1e-21,2e-23 acetolactate synthase isozyme III Thauera aromatica
Urocanase 0.006, 3e-07 hypothetical protein Z4243 Bacillus subtilis
L-carnitine dehydratase ------------ ------------ E. coli
putative cyanide hydratase ------------ ------------ E. coli
  1. Candidate reactions from the MetaCyc database (along with BLAST scores) added to enable production of no-production metabolites in E. coli.