TY - JOUR AU - Boehm, A. M. AU - Grosse-Coosmann, F. AU - Sickmann, A. PY - 2004 DA - 2004// TI - Command Line Tool for Calculating Theoretical MS Spectra for Given Sequences JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth328 DO - 10.1093/bioinformatics/bth328 ID - Boehm2004 ER - TY - STD TI - NCBI: National Center for Biotechnology Information. [http://www.ncbi.nih.gov/] UR - http://www.ncbi.nih.gov/ ID - ref2 ER - TY - JOUR AU - Boeckmann, B. AU - Bairoch, A. AU - Apweiler, R. AU - Blatter, M. C. AU - Estreicher, A. AU - Gasteiger, E. AU - Martin, M. J. AU - Mischoud, K. AU - O'Donovan, C. AU - Phan, I. AU - Pilbout, S. AU - Schneider, M. PY - 2003 DA - 2003// TI - The SWISS-PROT Protein Knowledgebase and Its Supplement TrEMBL in 2003 JO - Nucleic Acids Research VL - 31 UR - https://doi.org/10.1093/nar/gkg095 DO - 10.1093/nar/gkg095 ID - Boeckmann2003 ER - TY - CHAP AU - Wilkins, M. R. AU - Sanchez, J. C. AU - Gooley, A. A. AU - Appel, R. D. AU - Humphery-Smith, I. AU - Hochstrasser, D. F. AU - Williams, K. L. PY - 1996 DA - 1996// TI - Progress with Proteome Projects: Why All Proteins Expressed by a Genome Should Be Identified and How to Do It BT - Biotechnology and Genetic Engineering Reviews ID - Wilkins1996 ER - TY - JOUR AU - Krijgsveld, J. AU - Heck, A. J. R. PY - 2004 DA - 2004// TI - Quantitative Proteomics by Metabolic Labelling with Stable Isotopes JO - Drug Discovery Today VL - 3 UR - https://doi.org/10.1016/S1741-8372(04)02420-X DO - 10.1016/S1741-8372(04)02420-X ID - Krijgsveld2004 ER - TY - JOUR AU - Gygi, S. P. AU - Rist, B. AU - Gerber, S. A. AU - Turecek, F. AU - Gelb, M. H. AU - Aebersold, R. PY - 1999 DA - 1999// TI - Quantitative Analysis of Complex Protein Mixtures Using Isotope-Coded Affinity Tags JO - Nature Biotechnology VL - 17 UR - https://doi.org/10.1038/13690 DO - 10.1038/13690 ID - Gygi1999 ER - TY - JOUR AU - Cavalieri, D. AU - Filippo, C. D. PY - 2005 DA - 2005// TI - Bioinformatic Methods for Integrating Whole-Genome Expression Results into Cellular Networks JO - Drug Discovery Today VL - 10 UR - https://doi.org/10.1016/S1359-6446(05)03433-1 DO - 10.1016/S1359-6446(05)03433-1 ID - Cavalieri2005 ER - TY - JOUR AU - Aebersold, R. AU - Mann, M. PY - 2003 DA - 2003// TI - Mass Spectrometry-Based Proteomics JO - Nature VL - 422 UR - https://doi.org/10.1038/nature01511 DO - 10.1038/nature01511 ID - Aebersold2003 ER - TY - JOUR AU - Aebersold, R. AU - Goodlett, D. R. PY - 2001 DA - 2001// TI - Mass Spectrometry in Proteomics JO - Chemical Reviews VL - 101 UR - https://doi.org/10.1021/cr990076h DO - 10.1021/cr990076h ID - Aebersold2001 ER - TY - JOUR AU - Pütz, S. AU - Reinders, J. AU - Reinders, Y. AU - Sickmann, A. PY - 2005 DA - 2005// TI - Mass Spectrometry-Based Peptide Quantification: Applications and Limitations JO - Expert Review of Proteomics VL - 2 UR - https://doi.org/10.1586/14789450.2.3.381 DO - 10.1586/14789450.2.3.381 ID - Pütz2005 ER - TY - JOUR AU - Ross, P. L. AU - Huang, Y. N. AU - Marchese, J. N. AU - Williamson, B. AU - Parker, K. AU - Hattan, S. AU - Khainovski, N. AU - Pillai, S. AU - Dey, S. AU - Daniels, S. AU - Purkayastha, S. AU - Juhasz, P. AU - Martin, S. AU - Bartlet-Jones, M. AU - He, F. AU - Jacobson, A. AU - Pappin, D. J. PY - 2004 DA - 2004// TI - Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents JO - Molecular & Cellular Proteomics VL - 3 UR - https://doi.org/10.1074/mcp.M400129-MCP200 DO - 10.1074/mcp.M400129-MCP200 ID - Ross2004 ER - TY - JOUR AU - Ong, S. E. AU - Mann, M. PY - 2005 DA - 2005// TI - Mass Spectrometry-Based Proteomics Turns Quantitative JO - Nature Chemical Biology VL - 1 UR - https://doi.org/10.1038/nchembio736 DO - 10.1038/nchembio736 ID - Ong2005 ER - TY - CHAP AU - Boehm, A. M. AU - Galvin, R. P. AU - Sickmann, A. PY - 2004 DA - 2004// TI - Extractor for ESI Quadrupole TOF Tandem MS Data Enabled for High Throughput Batch Processing BT - BMC Bioinformatics ID - Boehm2004 ER - TY - CHAP AU - Shadforth, I. P. AU - Dunkley, T. P. J. AU - Lilley, K. S. AU - Bessant, C. PY - 2005 DA - 2005// TI - i-Tracker: For quantitative proteomics using iTRAQ(TM) BT - BMC Genomics ID - Shadforth2005 ER - TY - CHAP AU - Wu, K. P. AU - Lin, W. T. AU - Hung, W. N. AU - Yian, Y. H. AU - Chen, Y. R. AU - Chen, Y. J. AU - Sung, T. Y. AU - Hsu, W. L. ED - Martin, D. C. PY - 2005 DA - 2005// BT - MassTRAQ: A Fully Automated Tool for iTRAQ-labeled Protein Quantification: ; Stanford, USA. ID - Wu2005 ER - TY - STD TI - Applied Biosystems: Applied Biosystems iTRAQ™ Reagents Amine-Modifying Labeling Reagents for Multiplexed Relative and Absolute Protein Quantitation - Protocol. [http://docs.appliedbiosystems.com/pebiodocs/04350831.pdf] UR - http://docs.appliedbiosystems.com/pebiodocs/04350831.pdf ID - ref16 ER - TY - CHAP AU - Grosse-Coosmann, F. AU - Boehm, A. M. AU - Sickmann, A. PY - 2005 DA - 2005// TI - Efficient Analysis and Extraction of MS/MS Result Data from Mascot™ Result Files BT - BMC Bioinformatics ID - Grosse-Coosmann2005 ER - TY - JOUR AU - Zahedi, R. P. AU - Sickmann, A. AU - Boehm, A. M. AU - Winkler, C. AU - Zufall, N. AU - Schönfisch, B. AU - Guiard, B. AU - Pfanner, N. AU - Meisinger, C. PY - 2006 DA - 2006// TI - Proteomic Analysis of the Yeast Mitochondrial Outer Membrane Reveals Accumulation of a Subclass of Preproteins JO - Molecular Biology of the Cell VL - 17 UR - https://doi.org/10.1091/mbc.E05-08-0740 DO - 10.1091/mbc.E05-08-0740 ID - Zahedi2006 ER - TY - JOUR AU - Boehm, A. M. AU - Sickmann, A. PY - 2006 DA - 2006// TI - A Comprehensive Dictionary of Protein Accession Codes for Complete Protein Accession Identifier Alias Resolving JO - Proteomics VL - 6 UR - https://doi.org/10.1002/pmic.200600018 DO - 10.1002/pmic.200600018 ID - Boehm2006 ER - TY - JOUR AU - Jung, K. AU - Gannoun, A. AU - Sitek, B. AU - Apostolov, O. AU - Schramm, A. AU - Meyer, H. E. AU - Stühler, K. AU - Urfer, W. PY - 2006 DA - 2006// TI - Statistical Evaluation Of Methods For The Analysis Of Dynamic Protein Expression Data From A Tumor Study JO - REVSTAT – Statistical Journal VL - 4 ID - Jung2006 ER - TY - JOUR AU - Jung, K. AU - Gannoun, A. AU - Sitek, B. AU - Meyer, H. E. AU - Stühler, K. AU - Urfer, W. PY - 2005 DA - 2005// TI - Analysis of Dynamic Protein Expression Data JO - REVSTAT Statistical Journal VL - 3 ID - Jung2005 ER - TY - JOUR AU - MacCoss, M. J. AU - Wu, C. C. AU - Liu, H. AU - Sadygov, R. AU - Yates, J. R. PY - 2003 DA - 2003// TI - A Correlation Algorithm for the Automated Quantitative Analysis of Shotgun Proteomics Data JO - Analytical Chemistry VL - 75 UR - https://doi.org/10.1021/ac034790h DO - 10.1021/ac034790h ID - MacCoss2003 ER - TY - JOUR AU - Patwardhan, A. J. AU - Strittmatter, E. F. AU - Camp, D. G. AU - Smith, R. D. AU - Pallavicini, M. G. PY - 2006 DA - 2006// TI - Quantitative Proteome Analysis of Breast Cancer Cell Lines Using 18O-Labeling and an Accurate Mass and Time Tag Strategy JO - Proteomics VL - 6 UR - https://doi.org/10.1002/pmic.200500582 DO - 10.1002/pmic.200500582 ID - Patwardhan2006 ER - TY - CHAP AU - Kolkman, A. AU - Daran-Lapujade, P. AU - Fullaondo, A. AU - Olsthoorn, M. M. A. AU - Pronk, J. T. AU - Slijper, M. AU - Heck, A. J. R. PY - 2006 DA - 2006// TI - Proteome Analysis of Yeast Response to Various Nutrient Limitations BT - Molecular Systems Biology ID - Kolkman2006 ER - TY - CHAP AU - Smith, P. K. PY - 1987 DA - 1987// BT - Measurement of Protein Using Bicinchoninic Acid PB - US Patent 4839295 CY - Pierce Chemical Company ID - Smith1987 ER - TY - JOUR AU - Smith, P. K. AU - Krohn, R. I. AU - Hermanson, G. T. AU - Mallia, A. K. AU - Gartner, F. H. AU - Provenzano, M. D. AU - Fujimoto, E. K. AU - Goeke, N. M. AU - Olson, B. J. AU - Klenk, D. C. PY - 1985 DA - 1985// TI - Measurement of Protein Using Bicinchoninic Acid JO - Analytical Biochemistry VL - 150 UR - https://doi.org/10.1016/0003-2697(85)90442-7 DO - 10.1016/0003-2697(85)90442-7 ID - Smith1985 ER - TY - JOUR AU - Bradford, M. M. PY - 1976 DA - 1976// TI - A Rapid and Sensitive Method for the Quantitation of Microgram Quantities of Protein Utilizing the Principle of Protein-Dye Binding JO - Analytical Biochemistry VL - 72 UR - https://doi.org/10.1016/0003-2697(76)90527-3 DO - 10.1016/0003-2697(76)90527-3 ID - Bradford1976 ER - TY - JOUR AU - Sapan, C. V. AU - Lundblad, R. L. AU - Price, N. C. PY - 1999 DA - 1999// TI - Colorimetric Protein Assay Techniques JO - Biotechnol Appl Biochem VL - 29 ID - Sapan1999 ER - TY - JOUR AU - Perkins, D. N. AU - Pappin, D. J. C. AU - Creasy, D. M. AU - Cottrell, J. S. PY - 1999 DA - 1999// TI - Probability-Based Protein Identification by Searching Sequence Databases Using Mass Spectrometry Data JO - Electrophoresis VL - 20 UR - https://doi.org/3.0.CO;2-2 DO - 3.0.CO;2-2 ID - Perkins1999 ER - TY - JOUR AU - Eng, J. K. AU - McCormack, A. L. AU - Yates, J. R. PY - 1994 DA - 1994// TI - An Approach to Correlate Tandem Mass Spectral Data of Peptides with Amino Acid Sequences in a Protein Database JO - Journal of the American Society for Mass Spectrometry VL - 5 UR - https://doi.org/10.1016/1044-0305(94)80016-2 DO - 10.1016/1044-0305(94)80016-2 ID - Eng1994 ER - TY - CHAP AU - Reidegeld, K. A. AU - Franke, G. AU - Hebeler, R. AU - Wiese, S. AU - Oeljeklaus, S. AU - Lakhal, B. AU - Meyer, H. E. AU - Warscheid, B. PY - 2005 DA - 2005// BT - Peakardt.FindPairs - A Universal Software for Protein Quantitation via Stable Isotope-Labeling through Mass Spectrometry: ; München. ID - Reidegeld2005 ER - TY - STD TI - Matrix Science Ltd.: Quantitation: Statistical procedures. [http://www.matrixscience.com/help/quant_statistics_help.html] UR - http://www.matrixscience.com/help/quant_statistics_help.html ID - ref32 ER - TY - JOUR AU - Royston, P. PY - 1992 DA - 1992// TI - Approximating the Shapiro-Wilk W-Test for Non-Normality JO - Statistics and Computing VL - 2 UR - https://doi.org/10.1007/BF01891203 DO - 10.1007/BF01891203 ID - Royston1992 ER - TY - STD TI - Applied Biosystems: Multiplex Protein Quantitation using iTRAQ™ Reagents - 8plex - Publication 114PB15-01. [http://docs.appliedbiosystems.com/search-dodnum.taf?dodnum=116320] UR - http://docs.appliedbiosystems.com/search-dodnum.taf?dodnum=116320 ID - ref34 ER - TY - STD TI - Applied Biosystems: Using Pro Group Reports. [http://docs.appliedbiosystems.com/pebiodocs/00113913.pdf] UR - http://docs.appliedbiosystems.com/pebiodocs/00113913.pdf ID - ref35 ER -